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The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China

Adiantum reniforme var. sinense, a rare and endangered fern endemic to Chongqing, China, has been listed as one of the National Key Protected Wild Plants (Class I) in China. Here we assembled its chloroplast genome (cp genome) using Illumina sequencing reads to offer a genetic resource for future co...

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Autores principales: Chen, Jingfang, Chen, Yongmei, Zhou, Renchao, Liu, Ying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782870/
https://www.ncbi.nlm.nih.gov/pubmed/33458143
http://dx.doi.org/10.1080/23802359.2020.1815601
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author Chen, Jingfang
Chen, Yongmei
Zhou, Renchao
Liu, Ying
author_facet Chen, Jingfang
Chen, Yongmei
Zhou, Renchao
Liu, Ying
author_sort Chen, Jingfang
collection PubMed
description Adiantum reniforme var. sinense, a rare and endangered fern endemic to Chongqing, China, has been listed as one of the National Key Protected Wild Plants (Class I) in China. Here we assembled its chloroplast genome (cp genome) using Illumina sequencing reads to offer a genetic resource for future conservation genetic studies. The complete cp genome of A. reniforme var. sinense was 150,109 bp in length with an overall GC content of 42.85%. It contains a large single copy (LSC) region of 83,274 bp and a small single copy (SSC) region of 21,459 bp, separated by a pair of inverted repeat regions (IRs) of 22,688 bp each. The cp genome contains 84 protein coding genes, 28 tRNA genes, four rRNA genes, and one pseudogene (ψrps16). Phylogenetic analysis showed that A. reniforme var. sinense clustered together with four other Adiantum species and was sister to A. capillus-veneris.
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spelling pubmed-77828702021-01-14 The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China Chen, Jingfang Chen, Yongmei Zhou, Renchao Liu, Ying Mitochondrial DNA B Resour Mitogenome Announcement Adiantum reniforme var. sinense, a rare and endangered fern endemic to Chongqing, China, has been listed as one of the National Key Protected Wild Plants (Class I) in China. Here we assembled its chloroplast genome (cp genome) using Illumina sequencing reads to offer a genetic resource for future conservation genetic studies. The complete cp genome of A. reniforme var. sinense was 150,109 bp in length with an overall GC content of 42.85%. It contains a large single copy (LSC) region of 83,274 bp and a small single copy (SSC) region of 21,459 bp, separated by a pair of inverted repeat regions (IRs) of 22,688 bp each. The cp genome contains 84 protein coding genes, 28 tRNA genes, four rRNA genes, and one pseudogene (ψrps16). Phylogenetic analysis showed that A. reniforme var. sinense clustered together with four other Adiantum species and was sister to A. capillus-veneris. Taylor & Francis 2020-09-01 /pmc/articles/PMC7782870/ /pubmed/33458143 http://dx.doi.org/10.1080/23802359.2020.1815601 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chen, Jingfang
Chen, Yongmei
Zhou, Renchao
Liu, Ying
The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China
title The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China
title_full The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China
title_fullStr The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China
title_full_unstemmed The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China
title_short The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China
title_sort chloroplast genome of adiantum reniforme var. sinense, an endangered fern endemic to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782870/
https://www.ncbi.nlm.nih.gov/pubmed/33458143
http://dx.doi.org/10.1080/23802359.2020.1815601
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