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The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China
Adiantum reniforme var. sinense, a rare and endangered fern endemic to Chongqing, China, has been listed as one of the National Key Protected Wild Plants (Class I) in China. Here we assembled its chloroplast genome (cp genome) using Illumina sequencing reads to offer a genetic resource for future co...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782870/ https://www.ncbi.nlm.nih.gov/pubmed/33458143 http://dx.doi.org/10.1080/23802359.2020.1815601 |
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author | Chen, Jingfang Chen, Yongmei Zhou, Renchao Liu, Ying |
author_facet | Chen, Jingfang Chen, Yongmei Zhou, Renchao Liu, Ying |
author_sort | Chen, Jingfang |
collection | PubMed |
description | Adiantum reniforme var. sinense, a rare and endangered fern endemic to Chongqing, China, has been listed as one of the National Key Protected Wild Plants (Class I) in China. Here we assembled its chloroplast genome (cp genome) using Illumina sequencing reads to offer a genetic resource for future conservation genetic studies. The complete cp genome of A. reniforme var. sinense was 150,109 bp in length with an overall GC content of 42.85%. It contains a large single copy (LSC) region of 83,274 bp and a small single copy (SSC) region of 21,459 bp, separated by a pair of inverted repeat regions (IRs) of 22,688 bp each. The cp genome contains 84 protein coding genes, 28 tRNA genes, four rRNA genes, and one pseudogene (ψrps16). Phylogenetic analysis showed that A. reniforme var. sinense clustered together with four other Adiantum species and was sister to A. capillus-veneris. |
format | Online Article Text |
id | pubmed-7782870 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77828702021-01-14 The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China Chen, Jingfang Chen, Yongmei Zhou, Renchao Liu, Ying Mitochondrial DNA B Resour Mitogenome Announcement Adiantum reniforme var. sinense, a rare and endangered fern endemic to Chongqing, China, has been listed as one of the National Key Protected Wild Plants (Class I) in China. Here we assembled its chloroplast genome (cp genome) using Illumina sequencing reads to offer a genetic resource for future conservation genetic studies. The complete cp genome of A. reniforme var. sinense was 150,109 bp in length with an overall GC content of 42.85%. It contains a large single copy (LSC) region of 83,274 bp and a small single copy (SSC) region of 21,459 bp, separated by a pair of inverted repeat regions (IRs) of 22,688 bp each. The cp genome contains 84 protein coding genes, 28 tRNA genes, four rRNA genes, and one pseudogene (ψrps16). Phylogenetic analysis showed that A. reniforme var. sinense clustered together with four other Adiantum species and was sister to A. capillus-veneris. Taylor & Francis 2020-09-01 /pmc/articles/PMC7782870/ /pubmed/33458143 http://dx.doi.org/10.1080/23802359.2020.1815601 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Chen, Jingfang Chen, Yongmei Zhou, Renchao Liu, Ying The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China |
title | The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China |
title_full | The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China |
title_fullStr | The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China |
title_full_unstemmed | The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China |
title_short | The chloroplast genome of Adiantum reniforme var. sinense, an endangered fern endemic to China |
title_sort | chloroplast genome of adiantum reniforme var. sinense, an endangered fern endemic to china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782870/ https://www.ncbi.nlm.nih.gov/pubmed/33458143 http://dx.doi.org/10.1080/23802359.2020.1815601 |
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