The complete chloroplast genome of Epimedium pudingense (Berberidaceae), a narrowly distributed plant species in China

Epimedium L. is the largest herbaceous genus of Berberidaceae which comprises more than 60 species. Epimedium pudingense is a rare plant species only narrowly inhabited in the Puding County in the Guizhou Province of China. Here, we first report the complete chloroplast genome of E. pudingense assem...

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Autores principales: Zhang, Yixin, Liu, Xiang, Yao, Yu, Luo, Yanjiao, Yang, Qianru, Zhang, Cheng, Chaoqun, Xu, Suo, Fengmei, Shen, Guoan, Guo, Baolin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782884/
https://www.ncbi.nlm.nih.gov/pubmed/33457886
http://dx.doi.org/10.1080/23802359.2020.1781560
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author Zhang, Yixin
Liu, Xiang
Yao, Yu
Luo, Yanjiao
Yang, Qianru
Zhang, Cheng
Chaoqun, Xu
Suo, Fengmei
Shen, Guoan
Guo, Baolin
author_facet Zhang, Yixin
Liu, Xiang
Yao, Yu
Luo, Yanjiao
Yang, Qianru
Zhang, Cheng
Chaoqun, Xu
Suo, Fengmei
Shen, Guoan
Guo, Baolin
author_sort Zhang, Yixin
collection PubMed
description Epimedium L. is the largest herbaceous genus of Berberidaceae which comprises more than 60 species. Epimedium pudingense is a rare plant species only narrowly inhabited in the Puding County in the Guizhou Province of China. Here, we first report the complete chloroplast genome of E. pudingense assembled from Illumina short-read sequencing data. The chloroplast genome of E. pudingense was 157,325 bp in length, with a total GC content of 36.11%. A total of 112 unique genes were identified, among which are 78 protein-coding genes, 30 tRNA genes and four rRNA genes. The phylogenetic analysis revealed that E. pudingense closely related to E. elachyphyllum. Our study will provide useful fundamental data for further phylogenetic and evolutionary studies of the Epimedium genus.
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spelling pubmed-77828842021-01-14 The complete chloroplast genome of Epimedium pudingense (Berberidaceae), a narrowly distributed plant species in China Zhang, Yixin Liu, Xiang Yao, Yu Luo, Yanjiao Yang, Qianru Zhang, Cheng Chaoqun, Xu Suo, Fengmei Shen, Guoan Guo, Baolin Mitochondrial DNA B Resour Mitogenome Announcement Epimedium L. is the largest herbaceous genus of Berberidaceae which comprises more than 60 species. Epimedium pudingense is a rare plant species only narrowly inhabited in the Puding County in the Guizhou Province of China. Here, we first report the complete chloroplast genome of E. pudingense assembled from Illumina short-read sequencing data. The chloroplast genome of E. pudingense was 157,325 bp in length, with a total GC content of 36.11%. A total of 112 unique genes were identified, among which are 78 protein-coding genes, 30 tRNA genes and four rRNA genes. The phylogenetic analysis revealed that E. pudingense closely related to E. elachyphyllum. Our study will provide useful fundamental data for further phylogenetic and evolutionary studies of the Epimedium genus. Taylor & Francis 2020-07-02 /pmc/articles/PMC7782884/ /pubmed/33457886 http://dx.doi.org/10.1080/23802359.2020.1781560 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Yixin
Liu, Xiang
Yao, Yu
Luo, Yanjiao
Yang, Qianru
Zhang, Cheng
Chaoqun, Xu
Suo, Fengmei
Shen, Guoan
Guo, Baolin
The complete chloroplast genome of Epimedium pudingense (Berberidaceae), a narrowly distributed plant species in China
title The complete chloroplast genome of Epimedium pudingense (Berberidaceae), a narrowly distributed plant species in China
title_full The complete chloroplast genome of Epimedium pudingense (Berberidaceae), a narrowly distributed plant species in China
title_fullStr The complete chloroplast genome of Epimedium pudingense (Berberidaceae), a narrowly distributed plant species in China
title_full_unstemmed The complete chloroplast genome of Epimedium pudingense (Berberidaceae), a narrowly distributed plant species in China
title_short The complete chloroplast genome of Epimedium pudingense (Berberidaceae), a narrowly distributed plant species in China
title_sort complete chloroplast genome of epimedium pudingense (berberidaceae), a narrowly distributed plant species in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782884/
https://www.ncbi.nlm.nih.gov/pubmed/33457886
http://dx.doi.org/10.1080/23802359.2020.1781560
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