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Characterization of the complete chloroplast genome sequence of the endangered species Platycrater arguta (Hydrangeaceae)
Platycrater arguta is a rare and endangered shrub species endemic to East Asia. Here, we report the complete chloroplast (cp) genome structure and its taxonomic position within Hydrangeaceae to promote its conservation and restoration. The complete cp genome of P. arguta was 157,810 bp in length and...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782893/ https://www.ncbi.nlm.nih.gov/pubmed/33458183 http://dx.doi.org/10.1080/23802359.2020.1821816 |
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author | Li, Yue-Ling Wei, Chun-Yan Chen, Xing-Yu Sun, Zhong-Shuai |
author_facet | Li, Yue-Ling Wei, Chun-Yan Chen, Xing-Yu Sun, Zhong-Shuai |
author_sort | Li, Yue-Ling |
collection | PubMed |
description | Platycrater arguta is a rare and endangered shrub species endemic to East Asia. Here, we report the complete chloroplast (cp) genome structure and its taxonomic position within Hydrangeaceae to promote its conservation and restoration. The complete cp genome of P. arguta was 157,810 bp in length and contained a large single-copy region (LSC) of 86,823 bp and a small single-copy region (SSC) of 18,735 bp, as well as a pair of inverted repeat (IR) regions of 26,126 bp, each. 113 unique genes are predicted in this cp genome, including 79 protein-coding genes, 30 transfer RNA (tRNA) genes and 4 rRNAs. Maximum-likelihood (ML) phylogenetic analysis based on 79 shared cp CDS (coding DNA sequences) of 19 species reveals a close relationship between P. arguta and Schizophragma hydrangeoides. |
format | Online Article Text |
id | pubmed-7782893 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77828932021-01-14 Characterization of the complete chloroplast genome sequence of the endangered species Platycrater arguta (Hydrangeaceae) Li, Yue-Ling Wei, Chun-Yan Chen, Xing-Yu Sun, Zhong-Shuai Mitochondrial DNA B Resour Mitogenome Announcement Platycrater arguta is a rare and endangered shrub species endemic to East Asia. Here, we report the complete chloroplast (cp) genome structure and its taxonomic position within Hydrangeaceae to promote its conservation and restoration. The complete cp genome of P. arguta was 157,810 bp in length and contained a large single-copy region (LSC) of 86,823 bp and a small single-copy region (SSC) of 18,735 bp, as well as a pair of inverted repeat (IR) regions of 26,126 bp, each. 113 unique genes are predicted in this cp genome, including 79 protein-coding genes, 30 transfer RNA (tRNA) genes and 4 rRNAs. Maximum-likelihood (ML) phylogenetic analysis based on 79 shared cp CDS (coding DNA sequences) of 19 species reveals a close relationship between P. arguta and Schizophragma hydrangeoides. Taylor & Francis 2020-09-21 /pmc/articles/PMC7782893/ /pubmed/33458183 http://dx.doi.org/10.1080/23802359.2020.1821816 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Li, Yue-Ling Wei, Chun-Yan Chen, Xing-Yu Sun, Zhong-Shuai Characterization of the complete chloroplast genome sequence of the endangered species Platycrater arguta (Hydrangeaceae) |
title | Characterization of the complete chloroplast genome sequence of the endangered species Platycrater arguta (Hydrangeaceae) |
title_full | Characterization of the complete chloroplast genome sequence of the endangered species Platycrater arguta (Hydrangeaceae) |
title_fullStr | Characterization of the complete chloroplast genome sequence of the endangered species Platycrater arguta (Hydrangeaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome sequence of the endangered species Platycrater arguta (Hydrangeaceae) |
title_short | Characterization of the complete chloroplast genome sequence of the endangered species Platycrater arguta (Hydrangeaceae) |
title_sort | characterization of the complete chloroplast genome sequence of the endangered species platycrater arguta (hydrangeaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782893/ https://www.ncbi.nlm.nih.gov/pubmed/33458183 http://dx.doi.org/10.1080/23802359.2020.1821816 |
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