The complete chloroplast genome sequence of medicinal plant Alpinia chinensis (Retz.) Rosc

Alpinia chinensis (Retz.) Rosc is one of Chinese tradition herbal medicine and edible plant in China. In this report, we sequenced the complete chloroplast genome of A. chinensis. Through the assembly annotation of genome with high-throughput sequencing data, which help us to research the evolution....

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Autores principales: Mei, Yu, Cai, Shike, Xu, Shiqiang, Gu, Yan, Zhou, Fang, Wang, Jihua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782896/
https://www.ncbi.nlm.nih.gov/pubmed/33458155
http://dx.doi.org/10.1080/23802359.2020.1817805
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author Mei, Yu
Cai, Shike
Xu, Shiqiang
Gu, Yan
Zhou, Fang
Wang, Jihua
author_facet Mei, Yu
Cai, Shike
Xu, Shiqiang
Gu, Yan
Zhou, Fang
Wang, Jihua
author_sort Mei, Yu
collection PubMed
description Alpinia chinensis (Retz.) Rosc is one of Chinese tradition herbal medicine and edible plant in China. In this report, we sequenced the complete chloroplast genome of A. chinensis. Through the assembly annotation of genome with high-throughput sequencing data, which help us to research the evolution. The length of chloroplast sequences was 163,590 bp with a large single-copy region (LSC) and a small single-copy region (SSC), also, two inverted repeat region A (IR), whose length was 88,951, 15,299, and 29,670 bp, respectively. A total of 138 genes were predicted in the complete chloroplast genome, with 36.4% GC content, including 93 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. From the phylogenetic analysis, we could conclude that A. chinensis (Retz.) Rosc. was close to Alpinia oxyphylla in Zingiberaceae.
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spelling pubmed-77828962021-01-14 The complete chloroplast genome sequence of medicinal plant Alpinia chinensis (Retz.) Rosc Mei, Yu Cai, Shike Xu, Shiqiang Gu, Yan Zhou, Fang Wang, Jihua Mitochondrial DNA B Resour Mitogenome Announcement Alpinia chinensis (Retz.) Rosc is one of Chinese tradition herbal medicine and edible plant in China. In this report, we sequenced the complete chloroplast genome of A. chinensis. Through the assembly annotation of genome with high-throughput sequencing data, which help us to research the evolution. The length of chloroplast sequences was 163,590 bp with a large single-copy region (LSC) and a small single-copy region (SSC), also, two inverted repeat region A (IR), whose length was 88,951, 15,299, and 29,670 bp, respectively. A total of 138 genes were predicted in the complete chloroplast genome, with 36.4% GC content, including 93 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. From the phylogenetic analysis, we could conclude that A. chinensis (Retz.) Rosc. was close to Alpinia oxyphylla in Zingiberaceae. Taylor & Francis 2020-09-11 /pmc/articles/PMC7782896/ /pubmed/33458155 http://dx.doi.org/10.1080/23802359.2020.1817805 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Mei, Yu
Cai, Shike
Xu, Shiqiang
Gu, Yan
Zhou, Fang
Wang, Jihua
The complete chloroplast genome sequence of medicinal plant Alpinia chinensis (Retz.) Rosc
title The complete chloroplast genome sequence of medicinal plant Alpinia chinensis (Retz.) Rosc
title_full The complete chloroplast genome sequence of medicinal plant Alpinia chinensis (Retz.) Rosc
title_fullStr The complete chloroplast genome sequence of medicinal plant Alpinia chinensis (Retz.) Rosc
title_full_unstemmed The complete chloroplast genome sequence of medicinal plant Alpinia chinensis (Retz.) Rosc
title_short The complete chloroplast genome sequence of medicinal plant Alpinia chinensis (Retz.) Rosc
title_sort complete chloroplast genome sequence of medicinal plant alpinia chinensis (retz.) rosc
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782896/
https://www.ncbi.nlm.nih.gov/pubmed/33458155
http://dx.doi.org/10.1080/23802359.2020.1817805
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