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The plastid genome of a tropical tree Endiandra hainanensis (Lauraceae)
Endiandra hainanensis Merr. et Metc. ex Allen is a woody plant belonging to the genus Endiandra R. Brown Prodr, in the family Lauraceae. To better determine its phylogenetic location with respect to the other Endiandra species, the complete plastid genome of E. hainanensis was sequenced. The whole p...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782916/ https://www.ncbi.nlm.nih.gov/pubmed/33457943 http://dx.doi.org/10.1080/23802359.2020.1788453 |
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author | Dou, Lina |
author_facet | Dou, Lina |
author_sort | Dou, Lina |
collection | PubMed |
description | Endiandra hainanensis Merr. et Metc. ex Allen is a woody plant belonging to the genus Endiandra R. Brown Prodr, in the family Lauraceae. To better determine its phylogenetic location with respect to the other Endiandra species, the complete plastid genome of E. hainanensis was sequenced. The whole plastome size is 158,558 bp that includes a pair of inverted repeat (IR) regions of 25,513 bp, one large single-copy (LSC) region of 89,285 bp, and one small single-copy (SSC) region of 18,247 bp. The overall GC content of the whole plastome is 39.04%. Maximum likelihood phylogenetic analysis with TVM + F + R2 model was conducted using 20 complete plastomes of the Lauraceae, which supports the close relationship between E. hainanensis and E. dolichocarpa. |
format | Online Article Text |
id | pubmed-7782916 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77829162021-01-14 The plastid genome of a tropical tree Endiandra hainanensis (Lauraceae) Dou, Lina Mitochondrial DNA B Resour Mitogenome Announcement Endiandra hainanensis Merr. et Metc. ex Allen is a woody plant belonging to the genus Endiandra R. Brown Prodr, in the family Lauraceae. To better determine its phylogenetic location with respect to the other Endiandra species, the complete plastid genome of E. hainanensis was sequenced. The whole plastome size is 158,558 bp that includes a pair of inverted repeat (IR) regions of 25,513 bp, one large single-copy (LSC) region of 89,285 bp, and one small single-copy (SSC) region of 18,247 bp. The overall GC content of the whole plastome is 39.04%. Maximum likelihood phylogenetic analysis with TVM + F + R2 model was conducted using 20 complete plastomes of the Lauraceae, which supports the close relationship between E. hainanensis and E. dolichocarpa. Taylor & Francis 2020-07-11 /pmc/articles/PMC7782916/ /pubmed/33457943 http://dx.doi.org/10.1080/23802359.2020.1788453 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Dou, Lina The plastid genome of a tropical tree Endiandra hainanensis (Lauraceae) |
title | The plastid genome of a tropical tree Endiandra hainanensis (Lauraceae) |
title_full | The plastid genome of a tropical tree Endiandra hainanensis (Lauraceae) |
title_fullStr | The plastid genome of a tropical tree Endiandra hainanensis (Lauraceae) |
title_full_unstemmed | The plastid genome of a tropical tree Endiandra hainanensis (Lauraceae) |
title_short | The plastid genome of a tropical tree Endiandra hainanensis (Lauraceae) |
title_sort | plastid genome of a tropical tree endiandra hainanensis (lauraceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782916/ https://www.ncbi.nlm.nih.gov/pubmed/33457943 http://dx.doi.org/10.1080/23802359.2020.1788453 |
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