The complete genome sequence of Sorbus insignis (Rosaceae: Amygdaloideae), an epiphytic shrub in this genus

Sorbus insignis (Hook. f.) Hedl., belonging to S. sect. Multijugae Yu is an epiphytic shrub. Its phylogenetic position is still poorly understood. In this study, we assembled its complete chloroplast genome from whole-genome high-throughput sequencing data. The chloroplast genome was 159, 993 bp in...

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Autores principales: Tan, Jing, Wang, Yi, Wu, Wei, Li, Yongquan, Zhao, Wanyi, Liao, Wenbo, Fan, Qiang, Liao, Boyong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782918/
https://www.ncbi.nlm.nih.gov/pubmed/33458123
http://dx.doi.org/10.1080/23802359.2020.1810150
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author Tan, Jing
Wang, Yi
Wu, Wei
Li, Yongquan
Zhao, Wanyi
Liao, Wenbo
Fan, Qiang
Liao, Boyong
author_facet Tan, Jing
Wang, Yi
Wu, Wei
Li, Yongquan
Zhao, Wanyi
Liao, Wenbo
Fan, Qiang
Liao, Boyong
author_sort Tan, Jing
collection PubMed
description Sorbus insignis (Hook. f.) Hedl., belonging to S. sect. Multijugae Yu is an epiphytic shrub. Its phylogenetic position is still poorly understood. In this study, we assembled its complete chloroplast genome from whole-genome high-throughput sequencing data. The chloroplast genome was 159, 993 bp in length, with a large single-copy (LSC) region of 87, 932 bp, a small single-copy (SSC) region of 19, 255 bp, separated by two inverted repeat (IR) regions of 26, 403 bp each. It was predicted to contain a total of 132 genes, with an overall GC content of 36.56%. Phylogenetic analysis suggested S. insignis belongs to S. L. sensu stricto and closest to S. prattii Koehne among the published chloroplast genome.
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spelling pubmed-77829182021-01-14 The complete genome sequence of Sorbus insignis (Rosaceae: Amygdaloideae), an epiphytic shrub in this genus Tan, Jing Wang, Yi Wu, Wei Li, Yongquan Zhao, Wanyi Liao, Wenbo Fan, Qiang Liao, Boyong Mitochondrial DNA B Resour Mitogenome Announcement Sorbus insignis (Hook. f.) Hedl., belonging to S. sect. Multijugae Yu is an epiphytic shrub. Its phylogenetic position is still poorly understood. In this study, we assembled its complete chloroplast genome from whole-genome high-throughput sequencing data. The chloroplast genome was 159, 993 bp in length, with a large single-copy (LSC) region of 87, 932 bp, a small single-copy (SSC) region of 19, 255 bp, separated by two inverted repeat (IR) regions of 26, 403 bp each. It was predicted to contain a total of 132 genes, with an overall GC content of 36.56%. Phylogenetic analysis suggested S. insignis belongs to S. L. sensu stricto and closest to S. prattii Koehne among the published chloroplast genome. Taylor & Francis 2020-08-26 /pmc/articles/PMC7782918/ /pubmed/33458123 http://dx.doi.org/10.1080/23802359.2020.1810150 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Tan, Jing
Wang, Yi
Wu, Wei
Li, Yongquan
Zhao, Wanyi
Liao, Wenbo
Fan, Qiang
Liao, Boyong
The complete genome sequence of Sorbus insignis (Rosaceae: Amygdaloideae), an epiphytic shrub in this genus
title The complete genome sequence of Sorbus insignis (Rosaceae: Amygdaloideae), an epiphytic shrub in this genus
title_full The complete genome sequence of Sorbus insignis (Rosaceae: Amygdaloideae), an epiphytic shrub in this genus
title_fullStr The complete genome sequence of Sorbus insignis (Rosaceae: Amygdaloideae), an epiphytic shrub in this genus
title_full_unstemmed The complete genome sequence of Sorbus insignis (Rosaceae: Amygdaloideae), an epiphytic shrub in this genus
title_short The complete genome sequence of Sorbus insignis (Rosaceae: Amygdaloideae), an epiphytic shrub in this genus
title_sort complete genome sequence of sorbus insignis (rosaceae: amygdaloideae), an epiphytic shrub in this genus
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782918/
https://www.ncbi.nlm.nih.gov/pubmed/33458123
http://dx.doi.org/10.1080/23802359.2020.1810150
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