The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae)

Coelogyne fimbriata is an important orchid species with high medicinal value. Its complete chloroplast genome is 158,935 bp in length, which possesses the typical structure consising of a small single-copy region (SSC) of 18,743 bp, two inverted repeats (IRs) of 26,374 bp, and a large-single copy re...

Descripción completa

Detalles Bibliográficos
Autores principales: Yue, Ziyang, Kao, Huixia, Zhang, Yu, Wang, Tiemei, Dong, Shubin, Cheng, Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782944/
https://www.ncbi.nlm.nih.gov/pubmed/33458197
http://dx.doi.org/10.1080/23802359.2020.1823264
_version_ 1783632012773425152
author Yue, Ziyang
Kao, Huixia
Zhang, Yu
Wang, Tiemei
Dong, Shubin
Cheng, Jin
author_facet Yue, Ziyang
Kao, Huixia
Zhang, Yu
Wang, Tiemei
Dong, Shubin
Cheng, Jin
author_sort Yue, Ziyang
collection PubMed
description Coelogyne fimbriata is an important orchid species with high medicinal value. Its complete chloroplast genome is 158,935 bp in length, which possesses the typical structure consising of a small single-copy region (SSC) of 18,743 bp, two inverted repeats (IRs) of 26,374 bp, and a large-single copy region (LSC) of 87,444 bp. The genome encodes 137 genes, including 91 protein-coding genes (PCGs), 38 tRNA genes and 8 rRNA genes. And the overall GC content is 37.40%. In addition, our phylogenetic analysis based on cp genome revealed the phylogenetic relationship between C. fimbriata and other 22 species in Orchidaceae.
format Online
Article
Text
id pubmed-7782944
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77829442021-01-14 The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae) Yue, Ziyang Kao, Huixia Zhang, Yu Wang, Tiemei Dong, Shubin Cheng, Jin Mitochondrial DNA B Resour Mitogenome Announcement Coelogyne fimbriata is an important orchid species with high medicinal value. Its complete chloroplast genome is 158,935 bp in length, which possesses the typical structure consising of a small single-copy region (SSC) of 18,743 bp, two inverted repeats (IRs) of 26,374 bp, and a large-single copy region (LSC) of 87,444 bp. The genome encodes 137 genes, including 91 protein-coding genes (PCGs), 38 tRNA genes and 8 rRNA genes. And the overall GC content is 37.40%. In addition, our phylogenetic analysis based on cp genome revealed the phylogenetic relationship between C. fimbriata and other 22 species in Orchidaceae. Taylor & Francis 2020-09-29 /pmc/articles/PMC7782944/ /pubmed/33458197 http://dx.doi.org/10.1080/23802359.2020.1823264 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yue, Ziyang
Kao, Huixia
Zhang, Yu
Wang, Tiemei
Dong, Shubin
Cheng, Jin
The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae)
title The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae)
title_full The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae)
title_fullStr The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae)
title_full_unstemmed The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae)
title_short The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae)
title_sort complete chloroplast genome sequence of a medicinal orchid species coelogyne fimbriata (orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782944/
https://www.ncbi.nlm.nih.gov/pubmed/33458197
http://dx.doi.org/10.1080/23802359.2020.1823264
work_keys_str_mv AT yueziyang thecompletechloroplastgenomesequenceofamedicinalorchidspeciescoelogynefimbriataorchidaceae
AT kaohuixia thecompletechloroplastgenomesequenceofamedicinalorchidspeciescoelogynefimbriataorchidaceae
AT zhangyu thecompletechloroplastgenomesequenceofamedicinalorchidspeciescoelogynefimbriataorchidaceae
AT wangtiemei thecompletechloroplastgenomesequenceofamedicinalorchidspeciescoelogynefimbriataorchidaceae
AT dongshubin thecompletechloroplastgenomesequenceofamedicinalorchidspeciescoelogynefimbriataorchidaceae
AT chengjin thecompletechloroplastgenomesequenceofamedicinalorchidspeciescoelogynefimbriataorchidaceae
AT yueziyang completechloroplastgenomesequenceofamedicinalorchidspeciescoelogynefimbriataorchidaceae
AT kaohuixia completechloroplastgenomesequenceofamedicinalorchidspeciescoelogynefimbriataorchidaceae
AT zhangyu completechloroplastgenomesequenceofamedicinalorchidspeciescoelogynefimbriataorchidaceae
AT wangtiemei completechloroplastgenomesequenceofamedicinalorchidspeciescoelogynefimbriataorchidaceae
AT dongshubin completechloroplastgenomesequenceofamedicinalorchidspeciescoelogynefimbriataorchidaceae
AT chengjin completechloroplastgenomesequenceofamedicinalorchidspeciescoelogynefimbriataorchidaceae

Ejemplares similares