Sequence and phylogenetic analysis of the chloroplast genome for Rosa xanthina

Rosa xanthina is a wild shrub rose that is native to open slopes and scrubby areas in central China. In this study, the chloroplast genome sequence of R. xanthina been assembled and characterized by Illumina sequencing. The complete chloroplast genome was 157,214 bp in length, containing a large sin...

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Autores principales: Gao, Chengwen, Wu, Chuanhong, Zhang, Qian, Wu, Mingxuan, Chen, Ruirui, Zhao, Yalin, Guo, Aiguo, Li, Zhiqiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782961/
https://www.ncbi.nlm.nih.gov/pubmed/33458003
http://dx.doi.org/10.1080/23802359.2020.1792369
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author Gao, Chengwen
Wu, Chuanhong
Zhang, Qian
Wu, Mingxuan
Chen, Ruirui
Zhao, Yalin
Guo, Aiguo
Li, Zhiqiang
author_facet Gao, Chengwen
Wu, Chuanhong
Zhang, Qian
Wu, Mingxuan
Chen, Ruirui
Zhao, Yalin
Guo, Aiguo
Li, Zhiqiang
author_sort Gao, Chengwen
collection PubMed
description Rosa xanthina is a wild shrub rose that is native to open slopes and scrubby areas in central China. In this study, the chloroplast genome sequence of R. xanthina been assembled and characterized by Illumina sequencing. The complete chloroplast genome was 157,214 bp in length, containing a large single-copy region (LSC) of 86,302 bp and a small single-copy region (SSC) of 18,770 bp, which were separated by a pair of 26,071 bp inverted repeat regions (IRs), each. A total contained 137 genes, including 90 protein-coding, 8 rRNA, and 39 tRNA genes. Maximum-likelihood phylogenetic analysis of 15 representative plastomes within the order Rosa suggests that R. xanthina closely related to the Rosa berberifolia.
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spelling pubmed-77829612021-01-14 Sequence and phylogenetic analysis of the chloroplast genome for Rosa xanthina Gao, Chengwen Wu, Chuanhong Zhang, Qian Wu, Mingxuan Chen, Ruirui Zhao, Yalin Guo, Aiguo Li, Zhiqiang Mitochondrial DNA B Resour Mitogenome Announcement Rosa xanthina is a wild shrub rose that is native to open slopes and scrubby areas in central China. In this study, the chloroplast genome sequence of R. xanthina been assembled and characterized by Illumina sequencing. The complete chloroplast genome was 157,214 bp in length, containing a large single-copy region (LSC) of 86,302 bp and a small single-copy region (SSC) of 18,770 bp, which were separated by a pair of 26,071 bp inverted repeat regions (IRs), each. A total contained 137 genes, including 90 protein-coding, 8 rRNA, and 39 tRNA genes. Maximum-likelihood phylogenetic analysis of 15 representative plastomes within the order Rosa suggests that R. xanthina closely related to the Rosa berberifolia. Taylor & Francis 2020-07-20 /pmc/articles/PMC7782961/ /pubmed/33458003 http://dx.doi.org/10.1080/23802359.2020.1792369 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Gao, Chengwen
Wu, Chuanhong
Zhang, Qian
Wu, Mingxuan
Chen, Ruirui
Zhao, Yalin
Guo, Aiguo
Li, Zhiqiang
Sequence and phylogenetic analysis of the chloroplast genome for Rosa xanthina
title Sequence and phylogenetic analysis of the chloroplast genome for Rosa xanthina
title_full Sequence and phylogenetic analysis of the chloroplast genome for Rosa xanthina
title_fullStr Sequence and phylogenetic analysis of the chloroplast genome for Rosa xanthina
title_full_unstemmed Sequence and phylogenetic analysis of the chloroplast genome for Rosa xanthina
title_short Sequence and phylogenetic analysis of the chloroplast genome for Rosa xanthina
title_sort sequence and phylogenetic analysis of the chloroplast genome for rosa xanthina
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782961/
https://www.ncbi.nlm.nih.gov/pubmed/33458003
http://dx.doi.org/10.1080/23802359.2020.1792369
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