The complete mitochondrial genome of an endangered mangrove plant: Scyphiphora hydrophyllacea

The complete mitochondrial genome of an endangered mangrove plant: Scyphiphora hydrophyllacea was analyzed in this paper, which is the first for the genus within the family Rubiaceae. The mitogenome sequence is 354,155 bp in length containing 3 ribosomal RNA genes, 16 transfer RNA genes, and 37 prot...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Yuechao, Wei, Xianya, Lin, Guangxuan, Liu, Yiming, Zhang, Ying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782974/
https://www.ncbi.nlm.nih.gov/pubmed/33457946
http://dx.doi.org/10.1080/23802359.2020.1788460
_version_ 1783632020004405248
author Chen, Yuechao
Wei, Xianya
Lin, Guangxuan
Liu, Yiming
Zhang, Ying
author_facet Chen, Yuechao
Wei, Xianya
Lin, Guangxuan
Liu, Yiming
Zhang, Ying
author_sort Chen, Yuechao
collection PubMed
description The complete mitochondrial genome of an endangered mangrove plant: Scyphiphora hydrophyllacea was analyzed in this paper, which is the first for the genus within the family Rubiaceae. The mitogenome sequence is 354,155 bp in length containing 3 ribosomal RNA genes, 16 transfer RNA genes, and 37 protein-coding genes. Gene ccmFc, ccmFn, rps3, rps13, rps10, rpl12, nad3 and cox1 contain one intron, gene cox2 and atp9 contain three introns and gene nad1, nad4 and nad7 contain four introns. Furthermore, Gene nad2 and nad5 have five introns. Gene nad1, nad2, nad5, nad7and Cox2 are trans-splicing genes. Phylogenetic analysis using the maximum likelihood method positioned S. hydrophyllacea closely with Asclepias syriaca in Gentianales.
format Online
Article
Text
id pubmed-7782974
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77829742021-01-14 The complete mitochondrial genome of an endangered mangrove plant: Scyphiphora hydrophyllacea Chen, Yuechao Wei, Xianya Lin, Guangxuan Liu, Yiming Zhang, Ying Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genome of an endangered mangrove plant: Scyphiphora hydrophyllacea was analyzed in this paper, which is the first for the genus within the family Rubiaceae. The mitogenome sequence is 354,155 bp in length containing 3 ribosomal RNA genes, 16 transfer RNA genes, and 37 protein-coding genes. Gene ccmFc, ccmFn, rps3, rps13, rps10, rpl12, nad3 and cox1 contain one intron, gene cox2 and atp9 contain three introns and gene nad1, nad4 and nad7 contain four introns. Furthermore, Gene nad2 and nad5 have five introns. Gene nad1, nad2, nad5, nad7and Cox2 are trans-splicing genes. Phylogenetic analysis using the maximum likelihood method positioned S. hydrophyllacea closely with Asclepias syriaca in Gentianales. Taylor & Francis 2020-07-11 /pmc/articles/PMC7782974/ /pubmed/33457946 http://dx.doi.org/10.1080/23802359.2020.1788460 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chen, Yuechao
Wei, Xianya
Lin, Guangxuan
Liu, Yiming
Zhang, Ying
The complete mitochondrial genome of an endangered mangrove plant: Scyphiphora hydrophyllacea
title The complete mitochondrial genome of an endangered mangrove plant: Scyphiphora hydrophyllacea
title_full The complete mitochondrial genome of an endangered mangrove plant: Scyphiphora hydrophyllacea
title_fullStr The complete mitochondrial genome of an endangered mangrove plant: Scyphiphora hydrophyllacea
title_full_unstemmed The complete mitochondrial genome of an endangered mangrove plant: Scyphiphora hydrophyllacea
title_short The complete mitochondrial genome of an endangered mangrove plant: Scyphiphora hydrophyllacea
title_sort complete mitochondrial genome of an endangered mangrove plant: scyphiphora hydrophyllacea
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782974/
https://www.ncbi.nlm.nih.gov/pubmed/33457946
http://dx.doi.org/10.1080/23802359.2020.1788460
work_keys_str_mv AT chenyuechao thecompletemitochondrialgenomeofanendangeredmangroveplantscyphiphorahydrophyllacea
AT weixianya thecompletemitochondrialgenomeofanendangeredmangroveplantscyphiphorahydrophyllacea
AT linguangxuan thecompletemitochondrialgenomeofanendangeredmangroveplantscyphiphorahydrophyllacea
AT liuyiming thecompletemitochondrialgenomeofanendangeredmangroveplantscyphiphorahydrophyllacea
AT zhangying thecompletemitochondrialgenomeofanendangeredmangroveplantscyphiphorahydrophyllacea
AT chenyuechao completemitochondrialgenomeofanendangeredmangroveplantscyphiphorahydrophyllacea
AT weixianya completemitochondrialgenomeofanendangeredmangroveplantscyphiphorahydrophyllacea
AT linguangxuan completemitochondrialgenomeofanendangeredmangroveplantscyphiphorahydrophyllacea
AT liuyiming completemitochondrialgenomeofanendangeredmangroveplantscyphiphorahydrophyllacea
AT zhangying completemitochondrialgenomeofanendangeredmangroveplantscyphiphorahydrophyllacea

Ejemplares similares