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Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae)

Coelogyne fimbriata has been classified as a national second-class protected orchid species in China. In this study, we report and characterize the complete chloroplast (cp) genome sequence of C. fimbriata in an effort to provide genomic resources useful for promoting its conservation and systematic...

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Autores principales: Wu, Qiu-Ping, Zhai, Jun-Wen, Wu, Kun-Lin, Fang, Lin, Zeng, Song-Jun, Li, Lin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782987/
https://www.ncbi.nlm.nih.gov/pubmed/33458221
http://dx.doi.org/10.1080/23802359.2020.1827058
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author Wu, Qiu-Ping
Zhai, Jun-Wen
Wu, Kun-Lin
Fang, Lin
Zeng, Song-Jun
Li, Lin
author_facet Wu, Qiu-Ping
Zhai, Jun-Wen
Wu, Kun-Lin
Fang, Lin
Zeng, Song-Jun
Li, Lin
author_sort Wu, Qiu-Ping
collection PubMed
description Coelogyne fimbriata has been classified as a national second-class protected orchid species in China. In this study, we report and characterize the complete chloroplast (cp) genome sequence of C. fimbriata in an effort to provide genomic resources useful for promoting its conservation and systematic research. The complete genome is 159,010 bp in length and the overall GC content is 43.3%. The cp genome sequence has a typical quadripartite structure, comprising two inverted repeats (IRA and IRB) regions, which are separated by a small single-copy (SSC) region and a large single-copy (LSC) region. Moreover, a total of 135 functional genes were annotated, including 89 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The phylogenetic analysis recovered a close relationship between C. fimbriata and Pleione formosana, and both species are placed within the tribe Arethuseae (Orchidaceae).
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spelling pubmed-77829872021-01-14 Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae) Wu, Qiu-Ping Zhai, Jun-Wen Wu, Kun-Lin Fang, Lin Zeng, Song-Jun Li, Lin Mitochondrial DNA B Resour Mitogenome Announcement Coelogyne fimbriata has been classified as a national second-class protected orchid species in China. In this study, we report and characterize the complete chloroplast (cp) genome sequence of C. fimbriata in an effort to provide genomic resources useful for promoting its conservation and systematic research. The complete genome is 159,010 bp in length and the overall GC content is 43.3%. The cp genome sequence has a typical quadripartite structure, comprising two inverted repeats (IRA and IRB) regions, which are separated by a small single-copy (SSC) region and a large single-copy (LSC) region. Moreover, a total of 135 functional genes were annotated, including 89 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The phylogenetic analysis recovered a close relationship between C. fimbriata and Pleione formosana, and both species are placed within the tribe Arethuseae (Orchidaceae). Taylor & Francis 2020-10-07 /pmc/articles/PMC7782987/ /pubmed/33458221 http://dx.doi.org/10.1080/23802359.2020.1827058 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wu, Qiu-Ping
Zhai, Jun-Wen
Wu, Kun-Lin
Fang, Lin
Zeng, Song-Jun
Li, Lin
Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae)
title Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae)
title_full Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae)
title_fullStr Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae)
title_short Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae)
title_sort characterization of the complete chloroplast genome of coelogyne fimbriata (orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782987/
https://www.ncbi.nlm.nih.gov/pubmed/33458221
http://dx.doi.org/10.1080/23802359.2020.1827058
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