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Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae)
Coelogyne fimbriata has been classified as a national second-class protected orchid species in China. In this study, we report and characterize the complete chloroplast (cp) genome sequence of C. fimbriata in an effort to provide genomic resources useful for promoting its conservation and systematic...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782987/ https://www.ncbi.nlm.nih.gov/pubmed/33458221 http://dx.doi.org/10.1080/23802359.2020.1827058 |
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author | Wu, Qiu-Ping Zhai, Jun-Wen Wu, Kun-Lin Fang, Lin Zeng, Song-Jun Li, Lin |
author_facet | Wu, Qiu-Ping Zhai, Jun-Wen Wu, Kun-Lin Fang, Lin Zeng, Song-Jun Li, Lin |
author_sort | Wu, Qiu-Ping |
collection | PubMed |
description | Coelogyne fimbriata has been classified as a national second-class protected orchid species in China. In this study, we report and characterize the complete chloroplast (cp) genome sequence of C. fimbriata in an effort to provide genomic resources useful for promoting its conservation and systematic research. The complete genome is 159,010 bp in length and the overall GC content is 43.3%. The cp genome sequence has a typical quadripartite structure, comprising two inverted repeats (IRA and IRB) regions, which are separated by a small single-copy (SSC) region and a large single-copy (LSC) region. Moreover, a total of 135 functional genes were annotated, including 89 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The phylogenetic analysis recovered a close relationship between C. fimbriata and Pleione formosana, and both species are placed within the tribe Arethuseae (Orchidaceae). |
format | Online Article Text |
id | pubmed-7782987 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77829872021-01-14 Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae) Wu, Qiu-Ping Zhai, Jun-Wen Wu, Kun-Lin Fang, Lin Zeng, Song-Jun Li, Lin Mitochondrial DNA B Resour Mitogenome Announcement Coelogyne fimbriata has been classified as a national second-class protected orchid species in China. In this study, we report and characterize the complete chloroplast (cp) genome sequence of C. fimbriata in an effort to provide genomic resources useful for promoting its conservation and systematic research. The complete genome is 159,010 bp in length and the overall GC content is 43.3%. The cp genome sequence has a typical quadripartite structure, comprising two inverted repeats (IRA and IRB) regions, which are separated by a small single-copy (SSC) region and a large single-copy (LSC) region. Moreover, a total of 135 functional genes were annotated, including 89 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The phylogenetic analysis recovered a close relationship between C. fimbriata and Pleione formosana, and both species are placed within the tribe Arethuseae (Orchidaceae). Taylor & Francis 2020-10-07 /pmc/articles/PMC7782987/ /pubmed/33458221 http://dx.doi.org/10.1080/23802359.2020.1827058 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Wu, Qiu-Ping Zhai, Jun-Wen Wu, Kun-Lin Fang, Lin Zeng, Song-Jun Li, Lin Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae) |
title | Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae) |
title_full | Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae) |
title_fullStr | Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae) |
title_short | Characterization of the complete chloroplast genome of Coelogyne fimbriata (Orchidaceae) |
title_sort | characterization of the complete chloroplast genome of coelogyne fimbriata (orchidaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7782987/ https://www.ncbi.nlm.nih.gov/pubmed/33458221 http://dx.doi.org/10.1080/23802359.2020.1827058 |
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