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The complete chloroplast genome sequence of Senna bicapsularis

The complete chloroplast genome sequence of Senna bicapsularis was characterized from Illumina pair-end sequencing. The chloroplast genome of S. bicapsularis was 161,056 bp in length, containing a large single-copy region (LSC) of 90,416 bp, a small single-copy region (SSC) of 18,538 bp, and two inv...

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Autor principal: Hou, Zhe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783037/
https://www.ncbi.nlm.nih.gov/pubmed/33457756
http://dx.doi.org/10.1080/23802359.2020.1765216
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author Hou, Zhe
author_facet Hou, Zhe
author_sort Hou, Zhe
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description The complete chloroplast genome sequence of Senna bicapsularis was characterized from Illumina pair-end sequencing. The chloroplast genome of S. bicapsularis was 161,056 bp in length, containing a large single-copy region (LSC) of 90,416 bp, a small single-copy region (SSC) of 18,538 bp, and two inverted repeat (IR) regions of 26,051 bp. The overall GC content is 36.20%, while the correponding values of the LSC, SSC, and IR regions are 64.5%, 69.4%, and 60.2%, respectively. The genome contains 129 complete genes, including8 rRNAs, 37 tRNAs and 84 protein coding genes. A phylogenetic analysis showed that Senna tora and Erythrophleumfordiiform the basis of the produced evolutionary tree. S.bicapsularis and S. occidentalis, which belongto the group Cassia, share the closest relationship. The analysis of the cp genome of S.bicapsularisprovides crucial genetic information for further studies of this precious species and the taxonomy, phylogenetics and evolution of Cassia.
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spelling pubmed-77830372021-01-14 The complete chloroplast genome sequence of Senna bicapsularis Hou, Zhe Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome sequence of Senna bicapsularis was characterized from Illumina pair-end sequencing. The chloroplast genome of S. bicapsularis was 161,056 bp in length, containing a large single-copy region (LSC) of 90,416 bp, a small single-copy region (SSC) of 18,538 bp, and two inverted repeat (IR) regions of 26,051 bp. The overall GC content is 36.20%, while the correponding values of the LSC, SSC, and IR regions are 64.5%, 69.4%, and 60.2%, respectively. The genome contains 129 complete genes, including8 rRNAs, 37 tRNAs and 84 protein coding genes. A phylogenetic analysis showed that Senna tora and Erythrophleumfordiiform the basis of the produced evolutionary tree. S.bicapsularis and S. occidentalis, which belongto the group Cassia, share the closest relationship. The analysis of the cp genome of S.bicapsularisprovides crucial genetic information for further studies of this precious species and the taxonomy, phylogenetics and evolution of Cassia. Taylor & Francis 2020-05-14 /pmc/articles/PMC7783037/ /pubmed/33457756 http://dx.doi.org/10.1080/23802359.2020.1765216 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Hou, Zhe
The complete chloroplast genome sequence of Senna bicapsularis
title The complete chloroplast genome sequence of Senna bicapsularis
title_full The complete chloroplast genome sequence of Senna bicapsularis
title_fullStr The complete chloroplast genome sequence of Senna bicapsularis
title_full_unstemmed The complete chloroplast genome sequence of Senna bicapsularis
title_short The complete chloroplast genome sequence of Senna bicapsularis
title_sort complete chloroplast genome sequence of senna bicapsularis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783037/
https://www.ncbi.nlm.nih.gov/pubmed/33457756
http://dx.doi.org/10.1080/23802359.2020.1765216
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