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The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae)

Dendrobium wangliangii is a rare orchid species with extremely small populations, endemic to China. In this study, the complete chloroplast (cp) genome sequence and the genome features of D. wangliangii were analyzed. The whole cp genome sequence of D. wangliangii is 160,052 including a large single...

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Autores principales: Shao, Shi-Cheng, Tang, Lu, Luo, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783038/
https://www.ncbi.nlm.nih.gov/pubmed/33458216
http://dx.doi.org/10.1080/23802359.2020.1827063
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author Shao, Shi-Cheng
Tang, Lu
Luo, Yan
author_facet Shao, Shi-Cheng
Tang, Lu
Luo, Yan
author_sort Shao, Shi-Cheng
collection PubMed
description Dendrobium wangliangii is a rare orchid species with extremely small populations, endemic to China. In this study, the complete chloroplast (cp) genome sequence and the genome features of D. wangliangii were analyzed. The whole cp genome sequence of D. wangliangii is 160,052 including a large single-copy region (LSC, 87,525 bp), a small single-copy region (SSC, 18,373 bp), and a pair of repeat regions (IRs, 27,077 bp, each). The contents of four bases in cpDNA were A (30.9%), C (18.9%), G (18.3%) and T (31.9%), respectively. The total content of GC is 37.1%. The cp genome contains 129 genes, consisting of 124 unique genes (78 protein-coding genes, 38 tRNAs, and 8 rRNAs). Phylogenetic analysis showed that D. wangliangii nested with other Dendrobium spp. and was closely related to D. ellipsophyllum, D. wattii and D. longicornu.
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spelling pubmed-77830382021-01-14 The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae) Shao, Shi-Cheng Tang, Lu Luo, Yan Mitochondrial DNA B Resour Mitogenome Announcement Dendrobium wangliangii is a rare orchid species with extremely small populations, endemic to China. In this study, the complete chloroplast (cp) genome sequence and the genome features of D. wangliangii were analyzed. The whole cp genome sequence of D. wangliangii is 160,052 including a large single-copy region (LSC, 87,525 bp), a small single-copy region (SSC, 18,373 bp), and a pair of repeat regions (IRs, 27,077 bp, each). The contents of four bases in cpDNA were A (30.9%), C (18.9%), G (18.3%) and T (31.9%), respectively. The total content of GC is 37.1%. The cp genome contains 129 genes, consisting of 124 unique genes (78 protein-coding genes, 38 tRNAs, and 8 rRNAs). Phylogenetic analysis showed that D. wangliangii nested with other Dendrobium spp. and was closely related to D. ellipsophyllum, D. wattii and D. longicornu. Taylor & Francis 2020-10-07 /pmc/articles/PMC7783038/ /pubmed/33458216 http://dx.doi.org/10.1080/23802359.2020.1827063 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Shao, Shi-Cheng
Tang, Lu
Luo, Yan
The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae)
title The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae)
title_full The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae)
title_fullStr The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae)
title_full_unstemmed The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae)
title_short The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae)
title_sort complete chloroplast genome sequence of dendrobium wangliangii (orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783038/
https://www.ncbi.nlm.nih.gov/pubmed/33458216
http://dx.doi.org/10.1080/23802359.2020.1827063
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