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The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae)
Dendrobium wangliangii is a rare orchid species with extremely small populations, endemic to China. In this study, the complete chloroplast (cp) genome sequence and the genome features of D. wangliangii were analyzed. The whole cp genome sequence of D. wangliangii is 160,052 including a large single...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783038/ https://www.ncbi.nlm.nih.gov/pubmed/33458216 http://dx.doi.org/10.1080/23802359.2020.1827063 |
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author | Shao, Shi-Cheng Tang, Lu Luo, Yan |
author_facet | Shao, Shi-Cheng Tang, Lu Luo, Yan |
author_sort | Shao, Shi-Cheng |
collection | PubMed |
description | Dendrobium wangliangii is a rare orchid species with extremely small populations, endemic to China. In this study, the complete chloroplast (cp) genome sequence and the genome features of D. wangliangii were analyzed. The whole cp genome sequence of D. wangliangii is 160,052 including a large single-copy region (LSC, 87,525 bp), a small single-copy region (SSC, 18,373 bp), and a pair of repeat regions (IRs, 27,077 bp, each). The contents of four bases in cpDNA were A (30.9%), C (18.9%), G (18.3%) and T (31.9%), respectively. The total content of GC is 37.1%. The cp genome contains 129 genes, consisting of 124 unique genes (78 protein-coding genes, 38 tRNAs, and 8 rRNAs). Phylogenetic analysis showed that D. wangliangii nested with other Dendrobium spp. and was closely related to D. ellipsophyllum, D. wattii and D. longicornu. |
format | Online Article Text |
id | pubmed-7783038 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77830382021-01-14 The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae) Shao, Shi-Cheng Tang, Lu Luo, Yan Mitochondrial DNA B Resour Mitogenome Announcement Dendrobium wangliangii is a rare orchid species with extremely small populations, endemic to China. In this study, the complete chloroplast (cp) genome sequence and the genome features of D. wangliangii were analyzed. The whole cp genome sequence of D. wangliangii is 160,052 including a large single-copy region (LSC, 87,525 bp), a small single-copy region (SSC, 18,373 bp), and a pair of repeat regions (IRs, 27,077 bp, each). The contents of four bases in cpDNA were A (30.9%), C (18.9%), G (18.3%) and T (31.9%), respectively. The total content of GC is 37.1%. The cp genome contains 129 genes, consisting of 124 unique genes (78 protein-coding genes, 38 tRNAs, and 8 rRNAs). Phylogenetic analysis showed that D. wangliangii nested with other Dendrobium spp. and was closely related to D. ellipsophyllum, D. wattii and D. longicornu. Taylor & Francis 2020-10-07 /pmc/articles/PMC7783038/ /pubmed/33458216 http://dx.doi.org/10.1080/23802359.2020.1827063 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Shao, Shi-Cheng Tang, Lu Luo, Yan The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae) |
title | The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae) |
title_full | The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae) |
title_fullStr | The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae) |
title_short | The complete chloroplast genome sequence of Dendrobium wangliangii (Orchidaceae) |
title_sort | complete chloroplast genome sequence of dendrobium wangliangii (orchidaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783038/ https://www.ncbi.nlm.nih.gov/pubmed/33458216 http://dx.doi.org/10.1080/23802359.2020.1827063 |
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