The complete chloroplast genome of Sinomenium acutum (Menispermaceae)

We generated the complete chloroplast genome sequence of Sinomenium acutum, a species of the Menispermaceae family, and characterized from the de novo assembly of Illumina HiSeq paired-end sequencing data. The total length of the chloroplast genome of S. acutum was 162,787 bp with a large single-cop...

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Autores principales: Kim, Jinhyuk, Lee, Junki, Um, Sanghee, Choi, Sunseong, Kim, Hyojin, Chun, Hyang Sook, Nah, Gyoungju
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783043/
https://www.ncbi.nlm.nih.gov/pubmed/33458029
http://dx.doi.org/10.1080/23802359.2020.1797570
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author Kim, Jinhyuk
Lee, Junki
Um, Sanghee
Choi, Sunseong
Kim, Hyojin
Chun, Hyang Sook
Nah, Gyoungju
author_facet Kim, Jinhyuk
Lee, Junki
Um, Sanghee
Choi, Sunseong
Kim, Hyojin
Chun, Hyang Sook
Nah, Gyoungju
author_sort Kim, Jinhyuk
collection PubMed
description We generated the complete chloroplast genome sequence of Sinomenium acutum, a species of the Menispermaceae family, and characterized from the de novo assembly of Illumina HiSeq paired-end sequencing data. The total length of the chloroplast genome of S. acutum was 162,787 bp with a large single-copy (LSC) region of 91,430 bp, a small single-copy (SSC) region of 21,245 bp, and a pair of identical inverted repeat regions (IRs) of 25,056 bp. The total of 131 genes were annotated in the chloroplast genome of Sinomenium acutum, including 85 protein-coding genes, 38 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. The phylogenetic analysis of S. acutum with 18 related species revealed the closest taxonomical relationship with Menispermum dauricum in the Menispermaceae family.
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spelling pubmed-77830432021-01-14 The complete chloroplast genome of Sinomenium acutum (Menispermaceae) Kim, Jinhyuk Lee, Junki Um, Sanghee Choi, Sunseong Kim, Hyojin Chun, Hyang Sook Nah, Gyoungju Mitochondrial DNA B Resour Mitogenome Announcement We generated the complete chloroplast genome sequence of Sinomenium acutum, a species of the Menispermaceae family, and characterized from the de novo assembly of Illumina HiSeq paired-end sequencing data. The total length of the chloroplast genome of S. acutum was 162,787 bp with a large single-copy (LSC) region of 91,430 bp, a small single-copy (SSC) region of 21,245 bp, and a pair of identical inverted repeat regions (IRs) of 25,056 bp. The total of 131 genes were annotated in the chloroplast genome of Sinomenium acutum, including 85 protein-coding genes, 38 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. The phylogenetic analysis of S. acutum with 18 related species revealed the closest taxonomical relationship with Menispermum dauricum in the Menispermaceae family. Taylor & Francis 2020-07-25 /pmc/articles/PMC7783043/ /pubmed/33458029 http://dx.doi.org/10.1080/23802359.2020.1797570 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Kim, Jinhyuk
Lee, Junki
Um, Sanghee
Choi, Sunseong
Kim, Hyojin
Chun, Hyang Sook
Nah, Gyoungju
The complete chloroplast genome of Sinomenium acutum (Menispermaceae)
title The complete chloroplast genome of Sinomenium acutum (Menispermaceae)
title_full The complete chloroplast genome of Sinomenium acutum (Menispermaceae)
title_fullStr The complete chloroplast genome of Sinomenium acutum (Menispermaceae)
title_full_unstemmed The complete chloroplast genome of Sinomenium acutum (Menispermaceae)
title_short The complete chloroplast genome of Sinomenium acutum (Menispermaceae)
title_sort complete chloroplast genome of sinomenium acutum (menispermaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783043/
https://www.ncbi.nlm.nih.gov/pubmed/33458029
http://dx.doi.org/10.1080/23802359.2020.1797570
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