Complete chloroplast genome sequence of Lirianthe coco (Loureiro) N. H. Xia & C. Y. Wu (Magnoliaceae), a popular ornamental species

Lirianthe coco (Loureiro) N. H. Xia & C. Y. Wu is a popular ornamental species of Magnoliaceae. In the present study, the complete chloroplast genome (cpDNA) of L. coco was sequenced, assembled, and analyzed. The results indicated that the size of chloroplast genome of L. coco is 159,828 bp, whi...

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Autores principales: Sima, Yongkang, Wu, Tao, Fu, Yupin, Hao, Jiabo, Chen, Shaoyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783062/
https://www.ncbi.nlm.nih.gov/pubmed/33457808
http://dx.doi.org/10.1080/23802359.2020.1775143
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author Sima, Yongkang
Wu, Tao
Fu, Yupin
Hao, Jiabo
Chen, Shaoyu
author_facet Sima, Yongkang
Wu, Tao
Fu, Yupin
Hao, Jiabo
Chen, Shaoyu
author_sort Sima, Yongkang
collection PubMed
description Lirianthe coco (Loureiro) N. H. Xia & C. Y. Wu is a popular ornamental species of Magnoliaceae. In the present study, the complete chloroplast genome (cpDNA) of L. coco was sequenced, assembled, and analyzed. The results indicated that the size of chloroplast genome of L. coco is 159,828 bp, which exhibits a typical quadripartite structure including a large single-copy (LSC) region of 87,958 bp and a small single-copy (SSC) region of 18,768 bp separated by a pair of identical inverted repeat regions (IRs) of 26,551 bp each. The genome contained 131 genes (113 unique), including 86 protein-coding genes (80 unique), 37 tRNA genes (29 unique), and 8 rRNA genes (4 unique). Phylogenetic analysis showed that L. coco is affinal to L. odoratissima and forms a nomophyletic group with the latter and L. delavayi.
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spelling pubmed-77830622021-01-14 Complete chloroplast genome sequence of Lirianthe coco (Loureiro) N. H. Xia & C. Y. Wu (Magnoliaceae), a popular ornamental species Sima, Yongkang Wu, Tao Fu, Yupin Hao, Jiabo Chen, Shaoyu Mitochondrial DNA B Resour Mitogenome Announcement Lirianthe coco (Loureiro) N. H. Xia & C. Y. Wu is a popular ornamental species of Magnoliaceae. In the present study, the complete chloroplast genome (cpDNA) of L. coco was sequenced, assembled, and analyzed. The results indicated that the size of chloroplast genome of L. coco is 159,828 bp, which exhibits a typical quadripartite structure including a large single-copy (LSC) region of 87,958 bp and a small single-copy (SSC) region of 18,768 bp separated by a pair of identical inverted repeat regions (IRs) of 26,551 bp each. The genome contained 131 genes (113 unique), including 86 protein-coding genes (80 unique), 37 tRNA genes (29 unique), and 8 rRNA genes (4 unique). Phylogenetic analysis showed that L. coco is affinal to L. odoratissima and forms a nomophyletic group with the latter and L. delavayi. Taylor & Francis 2020-06-11 /pmc/articles/PMC7783062/ /pubmed/33457808 http://dx.doi.org/10.1080/23802359.2020.1775143 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Sima, Yongkang
Wu, Tao
Fu, Yupin
Hao, Jiabo
Chen, Shaoyu
Complete chloroplast genome sequence of Lirianthe coco (Loureiro) N. H. Xia & C. Y. Wu (Magnoliaceae), a popular ornamental species
title Complete chloroplast genome sequence of Lirianthe coco (Loureiro) N. H. Xia & C. Y. Wu (Magnoliaceae), a popular ornamental species
title_full Complete chloroplast genome sequence of Lirianthe coco (Loureiro) N. H. Xia & C. Y. Wu (Magnoliaceae), a popular ornamental species
title_fullStr Complete chloroplast genome sequence of Lirianthe coco (Loureiro) N. H. Xia & C. Y. Wu (Magnoliaceae), a popular ornamental species
title_full_unstemmed Complete chloroplast genome sequence of Lirianthe coco (Loureiro) N. H. Xia & C. Y. Wu (Magnoliaceae), a popular ornamental species
title_short Complete chloroplast genome sequence of Lirianthe coco (Loureiro) N. H. Xia & C. Y. Wu (Magnoliaceae), a popular ornamental species
title_sort complete chloroplast genome sequence of lirianthe coco (loureiro) n. h. xia & c. y. wu (magnoliaceae), a popular ornamental species
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783062/
https://www.ncbi.nlm.nih.gov/pubmed/33457808
http://dx.doi.org/10.1080/23802359.2020.1775143
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