Cargando…

Character-based identification system of scombrids from Indian waters for authentication and conservation purposes

Scombrids are the important component of pelagic fishery resources which include 54 species under 15 genera commonly known as mackerels, bonitos, and tunas. Due to the high commercial value attained, there are real chances of fraudulent substitution by species of inferior value. DNA based species id...

Descripción completa

Detalles Bibliográficos
Autores principales: Mahapatra, Sonalismita, A., Rathipriya, Dwivedy, Priyadarshini, E., Suresh, S. A., Shanmugam, A., Kathivelpandian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783091/
https://www.ncbi.nlm.nih.gov/pubmed/33458118
http://dx.doi.org/10.1080/23802359.2020.1810144
_version_ 1783632039269892096
author Mahapatra, Sonalismita
A., Rathipriya
Dwivedy, Priyadarshini
E., Suresh
S. A., Shanmugam
A., Kathivelpandian
author_facet Mahapatra, Sonalismita
A., Rathipriya
Dwivedy, Priyadarshini
E., Suresh
S. A., Shanmugam
A., Kathivelpandian
author_sort Mahapatra, Sonalismita
collection PubMed
description Scombrids are the important component of pelagic fishery resources which include 54 species under 15 genera commonly known as mackerels, bonitos, and tunas. Due to the high commercial value attained, there are real chances of fraudulent substitution by species of inferior value. DNA based species identification methods can be applied to detect product adulteration, as well as to better contribute to the conservation and management of these species by providing accurate species identification independently of the age of the individuals or the tissue processed. In this study, a total of 15 commercially important scombrid species from Indian waters were analyzed. Due to the inadequacy of mitochondrial COI barcoding gene in discriminating between some Thunnus species, cytochrome b sequences were used instead. For all the 15 species, we propose a DNA character-based keys which uses a diagnostic combination of nucleotides and respective probes, including the first character-based keys and probes to differentiate between Thunnus albacares and T. obsesus.
format Online
Article
Text
id pubmed-7783091
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77830912021-01-14 Character-based identification system of scombrids from Indian waters for authentication and conservation purposes Mahapatra, Sonalismita A., Rathipriya Dwivedy, Priyadarshini E., Suresh S. A., Shanmugam A., Kathivelpandian Mitochondrial DNA B Resour Rapid Communication Scombrids are the important component of pelagic fishery resources which include 54 species under 15 genera commonly known as mackerels, bonitos, and tunas. Due to the high commercial value attained, there are real chances of fraudulent substitution by species of inferior value. DNA based species identification methods can be applied to detect product adulteration, as well as to better contribute to the conservation and management of these species by providing accurate species identification independently of the age of the individuals or the tissue processed. In this study, a total of 15 commercially important scombrid species from Indian waters were analyzed. Due to the inadequacy of mitochondrial COI barcoding gene in discriminating between some Thunnus species, cytochrome b sequences were used instead. For all the 15 species, we propose a DNA character-based keys which uses a diagnostic combination of nucleotides and respective probes, including the first character-based keys and probes to differentiate between Thunnus albacares and T. obsesus. Taylor & Francis 2020-08-26 /pmc/articles/PMC7783091/ /pubmed/33458118 http://dx.doi.org/10.1080/23802359.2020.1810144 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Rapid Communication
Mahapatra, Sonalismita
A., Rathipriya
Dwivedy, Priyadarshini
E., Suresh
S. A., Shanmugam
A., Kathivelpandian
Character-based identification system of scombrids from Indian waters for authentication and conservation purposes
title Character-based identification system of scombrids from Indian waters for authentication and conservation purposes
title_full Character-based identification system of scombrids from Indian waters for authentication and conservation purposes
title_fullStr Character-based identification system of scombrids from Indian waters for authentication and conservation purposes
title_full_unstemmed Character-based identification system of scombrids from Indian waters for authentication and conservation purposes
title_short Character-based identification system of scombrids from Indian waters for authentication and conservation purposes
title_sort character-based identification system of scombrids from indian waters for authentication and conservation purposes
topic Rapid Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783091/
https://www.ncbi.nlm.nih.gov/pubmed/33458118
http://dx.doi.org/10.1080/23802359.2020.1810144
work_keys_str_mv AT mahapatrasonalismita characterbasedidentificationsystemofscombridsfromindianwatersforauthenticationandconservationpurposes
AT arathipriya characterbasedidentificationsystemofscombridsfromindianwatersforauthenticationandconservationpurposes
AT dwivedypriyadarshini characterbasedidentificationsystemofscombridsfromindianwatersforauthenticationandconservationpurposes
AT esuresh characterbasedidentificationsystemofscombridsfromindianwatersforauthenticationandconservationpurposes
AT sashanmugam characterbasedidentificationsystemofscombridsfromindianwatersforauthenticationandconservationpurposes
AT akathivelpandian characterbasedidentificationsystemofscombridsfromindianwatersforauthenticationandconservationpurposes