Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance

Camellia yuhsienensis Hu is an economically valuable species in the genus Camellia. It is widely used for breeding ornaments and oil varieties. In this study, the complete chloroplast (cp) genome sequence of C. yuhsienensis is assembled and annotated. The whole cp genome of C. yuhsienensis is 156,91...

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Autores principales: Nie, Ziyan, Huang, Xingzhao, Hu, Zhikang, Li, Xinlei, Yin, Hengfu, Li, Jiyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783147/
https://www.ncbi.nlm.nih.gov/pubmed/33458032
http://dx.doi.org/10.1080/23802359.2020.1797580
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author Nie, Ziyan
Huang, Xingzhao
Hu, Zhikang
Li, Xinlei
Yin, Hengfu
Li, Jiyuan
author_facet Nie, Ziyan
Huang, Xingzhao
Hu, Zhikang
Li, Xinlei
Yin, Hengfu
Li, Jiyuan
author_sort Nie, Ziyan
collection PubMed
description Camellia yuhsienensis Hu is an economically valuable species in the genus Camellia. It is widely used for breeding ornaments and oil varieties. In this study, the complete chloroplast (cp) genome sequence of C. yuhsienensis is assembled and annotated. The whole cp genome of C. yuhsienensis is 156,912 bp in size, composed of a small single copy (SSC) region of 18,296 bp and a large single copy (LSC) region of 86,560 bp, separated by a pair of inverted repeats (IRs, IRA: 86,561–112,588; IRB: 130,885–156,912). The overall GC content of C. yuhsienensis cp genome is 37.3%, with the base content A (31.08%), T (31.63%), C (19.02%), and G (18.27%). The phylogenetic analysis of 15 Camellia species based on 77 protein-coding genes shows that C. yuhsienensis is evolutionarily close to Camellia taliensis.
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spelling pubmed-77831472021-01-14 Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance Nie, Ziyan Huang, Xingzhao Hu, Zhikang Li, Xinlei Yin, Hengfu Li, Jiyuan Mitochondrial DNA B Resour Mitogenome Announcement Camellia yuhsienensis Hu is an economically valuable species in the genus Camellia. It is widely used for breeding ornaments and oil varieties. In this study, the complete chloroplast (cp) genome sequence of C. yuhsienensis is assembled and annotated. The whole cp genome of C. yuhsienensis is 156,912 bp in size, composed of a small single copy (SSC) region of 18,296 bp and a large single copy (LSC) region of 86,560 bp, separated by a pair of inverted repeats (IRs, IRA: 86,561–112,588; IRB: 130,885–156,912). The overall GC content of C. yuhsienensis cp genome is 37.3%, with the base content A (31.08%), T (31.63%), C (19.02%), and G (18.27%). The phylogenetic analysis of 15 Camellia species based on 77 protein-coding genes shows that C. yuhsienensis is evolutionarily close to Camellia taliensis. Taylor & Francis 2020-07-26 /pmc/articles/PMC7783147/ /pubmed/33458032 http://dx.doi.org/10.1080/23802359.2020.1797580 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Nie, Ziyan
Huang, Xingzhao
Hu, Zhikang
Li, Xinlei
Yin, Hengfu
Li, Jiyuan
Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance
title Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance
title_full Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance
title_fullStr Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance
title_full_unstemmed Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance
title_short Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance
title_sort characterization of the complete chloroplast genome of camellia yuhsienensis hu, a resilient shrub with strong floral fragrance
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7783147/
https://www.ncbi.nlm.nih.gov/pubmed/33458032
http://dx.doi.org/10.1080/23802359.2020.1797580
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