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A new precision medicine initiative at the dawn of exascale computing

Which signaling pathway and protein to select to mitigate the patient’s expected drug resistance? The number of possibilities facing the physician is massive, and the drug combination should fit the patient status. Here, we briefly review current approaches and data and map an innovative patient-spe...

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Autores principales: Nussinov, Ruth, Jang, Hyunbum, Nir, Guy, Tsai, Chung-Jung, Cheng, Feixiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7785737/
https://www.ncbi.nlm.nih.gov/pubmed/33402669
http://dx.doi.org/10.1038/s41392-020-00420-3
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author Nussinov, Ruth
Jang, Hyunbum
Nir, Guy
Tsai, Chung-Jung
Cheng, Feixiong
author_facet Nussinov, Ruth
Jang, Hyunbum
Nir, Guy
Tsai, Chung-Jung
Cheng, Feixiong
author_sort Nussinov, Ruth
collection PubMed
description Which signaling pathway and protein to select to mitigate the patient’s expected drug resistance? The number of possibilities facing the physician is massive, and the drug combination should fit the patient status. Here, we briefly review current approaches and data and map an innovative patient-specific strategy to forecast drug resistance targets that centers on parallel (or redundant) proliferation pathways in specialized cells. It considers the availability of each protein in each pathway in the specific cell, its activating mutations, and the chromatin accessibility of its encoding gene. The construction of the resulting Proliferation Pathway Network Atlas will harness the emerging exascale computing and advanced artificial intelligence (AI) methods for therapeutic development. Merging the resulting set of targets, pathways, and proteins, with current strategies will augment the choice for the attending physicians to thwart resistance.
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spelling pubmed-77857372021-01-14 A new precision medicine initiative at the dawn of exascale computing Nussinov, Ruth Jang, Hyunbum Nir, Guy Tsai, Chung-Jung Cheng, Feixiong Signal Transduct Target Ther Perspective Which signaling pathway and protein to select to mitigate the patient’s expected drug resistance? The number of possibilities facing the physician is massive, and the drug combination should fit the patient status. Here, we briefly review current approaches and data and map an innovative patient-specific strategy to forecast drug resistance targets that centers on parallel (or redundant) proliferation pathways in specialized cells. It considers the availability of each protein in each pathway in the specific cell, its activating mutations, and the chromatin accessibility of its encoding gene. The construction of the resulting Proliferation Pathway Network Atlas will harness the emerging exascale computing and advanced artificial intelligence (AI) methods for therapeutic development. Merging the resulting set of targets, pathways, and proteins, with current strategies will augment the choice for the attending physicians to thwart resistance. Nature Publishing Group UK 2021-01-06 /pmc/articles/PMC7785737/ /pubmed/33402669 http://dx.doi.org/10.1038/s41392-020-00420-3 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Perspective
Nussinov, Ruth
Jang, Hyunbum
Nir, Guy
Tsai, Chung-Jung
Cheng, Feixiong
A new precision medicine initiative at the dawn of exascale computing
title A new precision medicine initiative at the dawn of exascale computing
title_full A new precision medicine initiative at the dawn of exascale computing
title_fullStr A new precision medicine initiative at the dawn of exascale computing
title_full_unstemmed A new precision medicine initiative at the dawn of exascale computing
title_short A new precision medicine initiative at the dawn of exascale computing
title_sort new precision medicine initiative at the dawn of exascale computing
topic Perspective
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7785737/
https://www.ncbi.nlm.nih.gov/pubmed/33402669
http://dx.doi.org/10.1038/s41392-020-00420-3
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