Cargando…

An epithelial–mesenchymal transition-related long noncoding RNA signature correlates with the prognosis and progression in patients with bladder cancer

Bladder cancer is a common malignant tumour worldwide. Epithelial–mesenchymal transition (EMT)-related biomarkers can be used for early diagnosis and prognosis of cancer patients. To explore, accurate prediction models are essential to the diagnosis and treatment for bladder cancer. In the present s...

Descripción completa

Detalles Bibliográficos
Autores principales: Tong, Hang, Li, Tinghao, Gao, Shun, Yin, Hubin, Cao, Honghao, He, Weiyang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7786330/
https://www.ncbi.nlm.nih.gov/pubmed/33289830
http://dx.doi.org/10.1042/BSR20203944
_version_ 1783632604289826816
author Tong, Hang
Li, Tinghao
Gao, Shun
Yin, Hubin
Cao, Honghao
He, Weiyang
author_facet Tong, Hang
Li, Tinghao
Gao, Shun
Yin, Hubin
Cao, Honghao
He, Weiyang
author_sort Tong, Hang
collection PubMed
description Bladder cancer is a common malignant tumour worldwide. Epithelial–mesenchymal transition (EMT)-related biomarkers can be used for early diagnosis and prognosis of cancer patients. To explore, accurate prediction models are essential to the diagnosis and treatment for bladder cancer. In the present study, an EMT-related long noncoding RNA (lncRNA) model was developed to predict the prognosis of patients with bladder cancer. Firstly, the EMT-related lncRNAs were identified by Pearson correlation analysis, and a prognostic EMT-related lncRNA signature was constructed through univariate and multivariate Cox regression analyses. Then, the diagnostic efficacy and the clinically predictive capacity of the signature were assessed. Finally, Gene set enrichment analysis (GSEA) and functional enrichment analysis were carried out with bioinformatics. An EMT-related lncRNA signature consisting of TTC28-AS1, LINC02446, AL662844.4, AC105942.1, AL049840.3, SNHG26, USP30-AS1, PSMB8-AS1, AL031775.1, AC073534.1, U62317.2, C5orf56, AJ271736.1, and AL139385.1 was constructed. The diagnostic efficacy of the signature was evaluated by the time-dependent receiver-operating characteristic (ROC) curves, in which all the values of the area under the ROC (AUC) were more than 0.73. A nomogram established by integrating clinical variables and the risk score confirmed that the signature had a good clinically predict capacity. GSEA analysis revealed that some cancer-related and EMT-related pathways were enriched in high-risk groups, while immune-related pathways were enriched in low-risk groups. Functional enrichment analysis showed that EMT was associated with abundant GO terms or signaling pathways. In short, our research showed that the 14 EMT-related lncRNA signature may predict the prognosis and progression of patients with bladder cancer.
format Online
Article
Text
id pubmed-7786330
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Portland Press Ltd.
record_format MEDLINE/PubMed
spelling pubmed-77863302021-01-13 An epithelial–mesenchymal transition-related long noncoding RNA signature correlates with the prognosis and progression in patients with bladder cancer Tong, Hang Li, Tinghao Gao, Shun Yin, Hubin Cao, Honghao He, Weiyang Biosci Rep Bioinformatics Bladder cancer is a common malignant tumour worldwide. Epithelial–mesenchymal transition (EMT)-related biomarkers can be used for early diagnosis and prognosis of cancer patients. To explore, accurate prediction models are essential to the diagnosis and treatment for bladder cancer. In the present study, an EMT-related long noncoding RNA (lncRNA) model was developed to predict the prognosis of patients with bladder cancer. Firstly, the EMT-related lncRNAs were identified by Pearson correlation analysis, and a prognostic EMT-related lncRNA signature was constructed through univariate and multivariate Cox regression analyses. Then, the diagnostic efficacy and the clinically predictive capacity of the signature were assessed. Finally, Gene set enrichment analysis (GSEA) and functional enrichment analysis were carried out with bioinformatics. An EMT-related lncRNA signature consisting of TTC28-AS1, LINC02446, AL662844.4, AC105942.1, AL049840.3, SNHG26, USP30-AS1, PSMB8-AS1, AL031775.1, AC073534.1, U62317.2, C5orf56, AJ271736.1, and AL139385.1 was constructed. The diagnostic efficacy of the signature was evaluated by the time-dependent receiver-operating characteristic (ROC) curves, in which all the values of the area under the ROC (AUC) were more than 0.73. A nomogram established by integrating clinical variables and the risk score confirmed that the signature had a good clinically predict capacity. GSEA analysis revealed that some cancer-related and EMT-related pathways were enriched in high-risk groups, while immune-related pathways were enriched in low-risk groups. Functional enrichment analysis showed that EMT was associated with abundant GO terms or signaling pathways. In short, our research showed that the 14 EMT-related lncRNA signature may predict the prognosis and progression of patients with bladder cancer. Portland Press Ltd. 2021-01-05 /pmc/articles/PMC7786330/ /pubmed/33289830 http://dx.doi.org/10.1042/BSR20203944 Text en © 2021 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Bioinformatics
Tong, Hang
Li, Tinghao
Gao, Shun
Yin, Hubin
Cao, Honghao
He, Weiyang
An epithelial–mesenchymal transition-related long noncoding RNA signature correlates with the prognosis and progression in patients with bladder cancer
title An epithelial–mesenchymal transition-related long noncoding RNA signature correlates with the prognosis and progression in patients with bladder cancer
title_full An epithelial–mesenchymal transition-related long noncoding RNA signature correlates with the prognosis and progression in patients with bladder cancer
title_fullStr An epithelial–mesenchymal transition-related long noncoding RNA signature correlates with the prognosis and progression in patients with bladder cancer
title_full_unstemmed An epithelial–mesenchymal transition-related long noncoding RNA signature correlates with the prognosis and progression in patients with bladder cancer
title_short An epithelial–mesenchymal transition-related long noncoding RNA signature correlates with the prognosis and progression in patients with bladder cancer
title_sort epithelial–mesenchymal transition-related long noncoding rna signature correlates with the prognosis and progression in patients with bladder cancer
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7786330/
https://www.ncbi.nlm.nih.gov/pubmed/33289830
http://dx.doi.org/10.1042/BSR20203944
work_keys_str_mv AT tonghang anepithelialmesenchymaltransitionrelatedlongnoncodingrnasignaturecorrelateswiththeprognosisandprogressioninpatientswithbladdercancer
AT litinghao anepithelialmesenchymaltransitionrelatedlongnoncodingrnasignaturecorrelateswiththeprognosisandprogressioninpatientswithbladdercancer
AT gaoshun anepithelialmesenchymaltransitionrelatedlongnoncodingrnasignaturecorrelateswiththeprognosisandprogressioninpatientswithbladdercancer
AT yinhubin anepithelialmesenchymaltransitionrelatedlongnoncodingrnasignaturecorrelateswiththeprognosisandprogressioninpatientswithbladdercancer
AT caohonghao anepithelialmesenchymaltransitionrelatedlongnoncodingrnasignaturecorrelateswiththeprognosisandprogressioninpatientswithbladdercancer
AT heweiyang anepithelialmesenchymaltransitionrelatedlongnoncodingrnasignaturecorrelateswiththeprognosisandprogressioninpatientswithbladdercancer
AT tonghang epithelialmesenchymaltransitionrelatedlongnoncodingrnasignaturecorrelateswiththeprognosisandprogressioninpatientswithbladdercancer
AT litinghao epithelialmesenchymaltransitionrelatedlongnoncodingrnasignaturecorrelateswiththeprognosisandprogressioninpatientswithbladdercancer
AT gaoshun epithelialmesenchymaltransitionrelatedlongnoncodingrnasignaturecorrelateswiththeprognosisandprogressioninpatientswithbladdercancer
AT yinhubin epithelialmesenchymaltransitionrelatedlongnoncodingrnasignaturecorrelateswiththeprognosisandprogressioninpatientswithbladdercancer
AT caohonghao epithelialmesenchymaltransitionrelatedlongnoncodingrnasignaturecorrelateswiththeprognosisandprogressioninpatientswithbladdercancer
AT heweiyang epithelialmesenchymaltransitionrelatedlongnoncodingrnasignaturecorrelateswiththeprognosisandprogressioninpatientswithbladdercancer