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Artificial intelligence in automatic classification of invasive ductal carcinoma breast cancer in digital pathology images

Background: Breast cancer is one of the most causes of death in women. Early diagnosis and detection of Invasive Ductal Carcinoma (IDC) is an important key for the treatment of IDC. Computer-aided approaches have great potential to improve diagnosis accuracy. In this paper, we proposed a deep learni...

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Autores principales: Abdolahi, Mohammad, Salehi, Mohammad, Shokatian, Iman, Reiazi, Reza
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Iran University of Medical Sciences 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7787039/
https://www.ncbi.nlm.nih.gov/pubmed/33437736
http://dx.doi.org/10.34171/mjiri.34.140
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author Abdolahi, Mohammad
Salehi, Mohammad
Shokatian, Iman
Reiazi, Reza
author_facet Abdolahi, Mohammad
Salehi, Mohammad
Shokatian, Iman
Reiazi, Reza
author_sort Abdolahi, Mohammad
collection PubMed
description Background: Breast cancer is one of the most causes of death in women. Early diagnosis and detection of Invasive Ductal Carcinoma (IDC) is an important key for the treatment of IDC. Computer-aided approaches have great potential to improve diagnosis accuracy. In this paper, we proposed a deep learning-based method for the automatic classification of IDC in whole slide images (WSI) of breast cancer. Furthermore, different types of deep neural networks training such as training from scratch and transfer learning to classify IDC were evaluated. Methods: In total, 277524 image patches with 50×50-pixel size form original images were used for model training. In the first method, we train a simple convolutional neural network (named it baseline model) on these images. In the second approach, we used the pre-trained VGG-16 CNN model via feature extraction and fine-tuning for the classification of breast pathology images. Results: Our baseline model achieved a better result for the automatic classification of IDC in terms of F-measure and accuracy (83%, 85%) in comparison with original paper on this data set and achieved a comparable result with a new study that introduced accepted-rejected pooling layer. Also, transfer learning via feature extraction yielded better results (81%, 81%) in comparison with handcrafted features. Furthermore, transfer learning via feature extraction yielded better classification results in comparison with the baseline model. Conclusion: The experimental results demonstrate that using deep learning approaches yielded better results in comparison with handcrafted features. Also, using transfer learning in histopathology image analysis yielded significant results in comparison with training from scratch in much less time.
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spelling pubmed-77870392021-01-11 Artificial intelligence in automatic classification of invasive ductal carcinoma breast cancer in digital pathology images Abdolahi, Mohammad Salehi, Mohammad Shokatian, Iman Reiazi, Reza Med J Islam Repub Iran Original Article Background: Breast cancer is one of the most causes of death in women. Early diagnosis and detection of Invasive Ductal Carcinoma (IDC) is an important key for the treatment of IDC. Computer-aided approaches have great potential to improve diagnosis accuracy. In this paper, we proposed a deep learning-based method for the automatic classification of IDC in whole slide images (WSI) of breast cancer. Furthermore, different types of deep neural networks training such as training from scratch and transfer learning to classify IDC were evaluated. Methods: In total, 277524 image patches with 50×50-pixel size form original images were used for model training. In the first method, we train a simple convolutional neural network (named it baseline model) on these images. In the second approach, we used the pre-trained VGG-16 CNN model via feature extraction and fine-tuning for the classification of breast pathology images. Results: Our baseline model achieved a better result for the automatic classification of IDC in terms of F-measure and accuracy (83%, 85%) in comparison with original paper on this data set and achieved a comparable result with a new study that introduced accepted-rejected pooling layer. Also, transfer learning via feature extraction yielded better results (81%, 81%) in comparison with handcrafted features. Furthermore, transfer learning via feature extraction yielded better classification results in comparison with the baseline model. Conclusion: The experimental results demonstrate that using deep learning approaches yielded better results in comparison with handcrafted features. Also, using transfer learning in histopathology image analysis yielded significant results in comparison with training from scratch in much less time. Iran University of Medical Sciences 2020-10-20 /pmc/articles/PMC7787039/ /pubmed/33437736 http://dx.doi.org/10.34171/mjiri.34.140 Text en © 2020 Iran University of Medical Sciences http://creativecommons.org/licenses/by-nc-sa/1.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution NonCommercial-ShareAlike 1.0 License (CC BY-NC-SA 1.0), which allows users to read, copy, distribute and make derivative works for non-commercial purposes from the material, as long as the author of the original work is cited properly.
spellingShingle Original Article
Abdolahi, Mohammad
Salehi, Mohammad
Shokatian, Iman
Reiazi, Reza
Artificial intelligence in automatic classification of invasive ductal carcinoma breast cancer in digital pathology images
title Artificial intelligence in automatic classification of invasive ductal carcinoma breast cancer in digital pathology images
title_full Artificial intelligence in automatic classification of invasive ductal carcinoma breast cancer in digital pathology images
title_fullStr Artificial intelligence in automatic classification of invasive ductal carcinoma breast cancer in digital pathology images
title_full_unstemmed Artificial intelligence in automatic classification of invasive ductal carcinoma breast cancer in digital pathology images
title_short Artificial intelligence in automatic classification of invasive ductal carcinoma breast cancer in digital pathology images
title_sort artificial intelligence in automatic classification of invasive ductal carcinoma breast cancer in digital pathology images
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7787039/
https://www.ncbi.nlm.nih.gov/pubmed/33437736
http://dx.doi.org/10.34171/mjiri.34.140
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