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Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration
PURPOSE: To construct a survival model for predicting the prognosis of patients with kidney renal clear cell carcinoma (KIRC) based on gene expression related to immune response regulation. MATERIALS AND METHODS: KIRC mRNA sequencing data and patient clinical data were downloaded from the TCGA datab...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7787716/ https://www.ncbi.nlm.nih.gov/pubmed/33456463 http://dx.doi.org/10.1155/2020/6657013 |
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author | Wu, Guangzhen Xu, Yingkun Han, Chenglin Wang, Zilong Li, Jiayi Wang, Qifei Che, Xiangyu |
author_facet | Wu, Guangzhen Xu, Yingkun Han, Chenglin Wang, Zilong Li, Jiayi Wang, Qifei Che, Xiangyu |
author_sort | Wu, Guangzhen |
collection | PubMed |
description | PURPOSE: To construct a survival model for predicting the prognosis of patients with kidney renal clear cell carcinoma (KIRC) based on gene expression related to immune response regulation. MATERIALS AND METHODS: KIRC mRNA sequencing data and patient clinical data were downloaded from the TCGA database. The pathways and genes involved in the regulation of the immune response were identified from the GSEA database. A single factor Cox analysis was used to determine the association of mRNA in relation to patient prognosis (P < 0.05). The prognostic risk model was further established using the LASSO regression curve. The survival prognosis model was constructed, and the sensitivity and specificity of the model were evaluated using the ROC curve. RESULTS: Compared with normal kidney tissues, there were 28 dysregulated mRNA expressions in KIRC tissues (P < 0.05). Univariate Cox regression analysis revealed that 12 mRNAs were related to the prognosis of patients with renal cell carcinoma. The LASSO regression curve drew a risk signature consisting of six genes: TRAF6, FYN, IKBKG, LAT2, C2, IL4, EREG, TRAF2, and IL12A. The five-year ROC area analysis (AUC) showed that the model has good sensitivity and specificity (AUC >0.712). CONCLUSION: We constructed a risk prediction model based on the regulated immune response-related genes, which can effectively predict the survival of patients with KIRC. |
format | Online Article Text |
id | pubmed-7787716 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-77877162021-01-14 Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration Wu, Guangzhen Xu, Yingkun Han, Chenglin Wang, Zilong Li, Jiayi Wang, Qifei Che, Xiangyu J Oncol Research Article PURPOSE: To construct a survival model for predicting the prognosis of patients with kidney renal clear cell carcinoma (KIRC) based on gene expression related to immune response regulation. MATERIALS AND METHODS: KIRC mRNA sequencing data and patient clinical data were downloaded from the TCGA database. The pathways and genes involved in the regulation of the immune response were identified from the GSEA database. A single factor Cox analysis was used to determine the association of mRNA in relation to patient prognosis (P < 0.05). The prognostic risk model was further established using the LASSO regression curve. The survival prognosis model was constructed, and the sensitivity and specificity of the model were evaluated using the ROC curve. RESULTS: Compared with normal kidney tissues, there were 28 dysregulated mRNA expressions in KIRC tissues (P < 0.05). Univariate Cox regression analysis revealed that 12 mRNAs were related to the prognosis of patients with renal cell carcinoma. The LASSO regression curve drew a risk signature consisting of six genes: TRAF6, FYN, IKBKG, LAT2, C2, IL4, EREG, TRAF2, and IL12A. The five-year ROC area analysis (AUC) showed that the model has good sensitivity and specificity (AUC >0.712). CONCLUSION: We constructed a risk prediction model based on the regulated immune response-related genes, which can effectively predict the survival of patients with KIRC. Hindawi 2020-12-30 /pmc/articles/PMC7787716/ /pubmed/33456463 http://dx.doi.org/10.1155/2020/6657013 Text en Copyright © 2020 Guangzhen Wu et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Wu, Guangzhen Xu, Yingkun Han, Chenglin Wang, Zilong Li, Jiayi Wang, Qifei Che, Xiangyu Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration |
title | Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration |
title_full | Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration |
title_fullStr | Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration |
title_full_unstemmed | Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration |
title_short | Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration |
title_sort | identification of a prognostic risk signature of kidney renal clear cell carcinoma based on regulating the immune response pathway exploration |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7787716/ https://www.ncbi.nlm.nih.gov/pubmed/33456463 http://dx.doi.org/10.1155/2020/6657013 |
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