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Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration

PURPOSE: To construct a survival model for predicting the prognosis of patients with kidney renal clear cell carcinoma (KIRC) based on gene expression related to immune response regulation. MATERIALS AND METHODS: KIRC mRNA sequencing data and patient clinical data were downloaded from the TCGA datab...

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Autores principales: Wu, Guangzhen, Xu, Yingkun, Han, Chenglin, Wang, Zilong, Li, Jiayi, Wang, Qifei, Che, Xiangyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7787716/
https://www.ncbi.nlm.nih.gov/pubmed/33456463
http://dx.doi.org/10.1155/2020/6657013
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author Wu, Guangzhen
Xu, Yingkun
Han, Chenglin
Wang, Zilong
Li, Jiayi
Wang, Qifei
Che, Xiangyu
author_facet Wu, Guangzhen
Xu, Yingkun
Han, Chenglin
Wang, Zilong
Li, Jiayi
Wang, Qifei
Che, Xiangyu
author_sort Wu, Guangzhen
collection PubMed
description PURPOSE: To construct a survival model for predicting the prognosis of patients with kidney renal clear cell carcinoma (KIRC) based on gene expression related to immune response regulation. MATERIALS AND METHODS: KIRC mRNA sequencing data and patient clinical data were downloaded from the TCGA database. The pathways and genes involved in the regulation of the immune response were identified from the GSEA database. A single factor Cox analysis was used to determine the association of mRNA in relation to patient prognosis (P < 0.05). The prognostic risk model was further established using the LASSO regression curve. The survival prognosis model was constructed, and the sensitivity and specificity of the model were evaluated using the ROC curve. RESULTS: Compared with normal kidney tissues, there were 28 dysregulated mRNA expressions in KIRC tissues (P < 0.05). Univariate Cox regression analysis revealed that 12 mRNAs were related to the prognosis of patients with renal cell carcinoma. The LASSO regression curve drew a risk signature consisting of six genes: TRAF6, FYN, IKBKG, LAT2, C2, IL4, EREG, TRAF2, and IL12A. The five-year ROC area analysis (AUC) showed that the model has good sensitivity and specificity (AUC >0.712). CONCLUSION: We constructed a risk prediction model based on the regulated immune response-related genes, which can effectively predict the survival of patients with KIRC.
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spelling pubmed-77877162021-01-14 Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration Wu, Guangzhen Xu, Yingkun Han, Chenglin Wang, Zilong Li, Jiayi Wang, Qifei Che, Xiangyu J Oncol Research Article PURPOSE: To construct a survival model for predicting the prognosis of patients with kidney renal clear cell carcinoma (KIRC) based on gene expression related to immune response regulation. MATERIALS AND METHODS: KIRC mRNA sequencing data and patient clinical data were downloaded from the TCGA database. The pathways and genes involved in the regulation of the immune response were identified from the GSEA database. A single factor Cox analysis was used to determine the association of mRNA in relation to patient prognosis (P < 0.05). The prognostic risk model was further established using the LASSO regression curve. The survival prognosis model was constructed, and the sensitivity and specificity of the model were evaluated using the ROC curve. RESULTS: Compared with normal kidney tissues, there were 28 dysregulated mRNA expressions in KIRC tissues (P < 0.05). Univariate Cox regression analysis revealed that 12 mRNAs were related to the prognosis of patients with renal cell carcinoma. The LASSO regression curve drew a risk signature consisting of six genes: TRAF6, FYN, IKBKG, LAT2, C2, IL4, EREG, TRAF2, and IL12A. The five-year ROC area analysis (AUC) showed that the model has good sensitivity and specificity (AUC >0.712). CONCLUSION: We constructed a risk prediction model based on the regulated immune response-related genes, which can effectively predict the survival of patients with KIRC. Hindawi 2020-12-30 /pmc/articles/PMC7787716/ /pubmed/33456463 http://dx.doi.org/10.1155/2020/6657013 Text en Copyright © 2020 Guangzhen Wu et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wu, Guangzhen
Xu, Yingkun
Han, Chenglin
Wang, Zilong
Li, Jiayi
Wang, Qifei
Che, Xiangyu
Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration
title Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration
title_full Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration
title_fullStr Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration
title_full_unstemmed Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration
title_short Identification of a Prognostic Risk Signature of Kidney Renal Clear Cell Carcinoma Based on Regulating the Immune Response Pathway Exploration
title_sort identification of a prognostic risk signature of kidney renal clear cell carcinoma based on regulating the immune response pathway exploration
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7787716/
https://www.ncbi.nlm.nih.gov/pubmed/33456463
http://dx.doi.org/10.1155/2020/6657013
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