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Spike-triggered Clustering for Retinal Ganglion Cell Classification

Retinal ganglion cells (RGCs), the retina’s output neurons, encode visual information through spiking. The RGC receptive field (RF) represents the basic unit of visual information processing in the retina. RFs are commonly estimated using the spike-triggered average (STA), which is the average of th...

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Autores principales: Ahn, Jungryul, Yoo, Yongseok, Goo, Yong Sook
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Korean Society for Brain and Neural Sciences 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7788309/
https://www.ncbi.nlm.nih.gov/pubmed/33321473
http://dx.doi.org/10.5607/en20029
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author Ahn, Jungryul
Yoo, Yongseok
Goo, Yong Sook
author_facet Ahn, Jungryul
Yoo, Yongseok
Goo, Yong Sook
author_sort Ahn, Jungryul
collection PubMed
description Retinal ganglion cells (RGCs), the retina’s output neurons, encode visual information through spiking. The RGC receptive field (RF) represents the basic unit of visual information processing in the retina. RFs are commonly estimated using the spike-triggered average (STA), which is the average of the stimulus patterns to which a given RGC is sensitive. Whereas STA, based on the concept of the average, is simple and intuitive, it leaves more complex structures in the RFs undetected. Alternatively, spike-triggered covariance (STC) analysis provides information on second-order RF statistics. However, STC is computationally cumbersome and difficult to interpret. Thus, the objective of this study was to propose and validate a new computational method, called spike-triggered clustering (STCL), specific for multimodal RFs. Specifically, RFs were fit with a Gaussian mixture model, which provides the means and covariances of multiple RF clusters. The proposed method recovered bipolar stimulus patterns in the RFs of ON-OFF cells, while the STA identified only ON and OFF RGCs, and the remaining RGCs were labeled as unknown types. In contrast, our new STCL analysis distinguished ON-OFF RGCs from the ON, OFF, and unknown RGC types classified by STA. Thus, the proposed method enables us to include ON-OFF RGCs prior to retinal information analysis.
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spelling pubmed-77883092021-01-14 Spike-triggered Clustering for Retinal Ganglion Cell Classification Ahn, Jungryul Yoo, Yongseok Goo, Yong Sook Exp Neurobiol Original Article Retinal ganglion cells (RGCs), the retina’s output neurons, encode visual information through spiking. The RGC receptive field (RF) represents the basic unit of visual information processing in the retina. RFs are commonly estimated using the spike-triggered average (STA), which is the average of the stimulus patterns to which a given RGC is sensitive. Whereas STA, based on the concept of the average, is simple and intuitive, it leaves more complex structures in the RFs undetected. Alternatively, spike-triggered covariance (STC) analysis provides information on second-order RF statistics. However, STC is computationally cumbersome and difficult to interpret. Thus, the objective of this study was to propose and validate a new computational method, called spike-triggered clustering (STCL), specific for multimodal RFs. Specifically, RFs were fit with a Gaussian mixture model, which provides the means and covariances of multiple RF clusters. The proposed method recovered bipolar stimulus patterns in the RFs of ON-OFF cells, while the STA identified only ON and OFF RGCs, and the remaining RGCs were labeled as unknown types. In contrast, our new STCL analysis distinguished ON-OFF RGCs from the ON, OFF, and unknown RGC types classified by STA. Thus, the proposed method enables us to include ON-OFF RGCs prior to retinal information analysis. The Korean Society for Brain and Neural Sciences 2020-12-31 2020-12-16 /pmc/articles/PMC7788309/ /pubmed/33321473 http://dx.doi.org/10.5607/en20029 Text en Copyright © Experimental Neurobiology 2020 This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Ahn, Jungryul
Yoo, Yongseok
Goo, Yong Sook
Spike-triggered Clustering for Retinal Ganglion Cell Classification
title Spike-triggered Clustering for Retinal Ganglion Cell Classification
title_full Spike-triggered Clustering for Retinal Ganglion Cell Classification
title_fullStr Spike-triggered Clustering for Retinal Ganglion Cell Classification
title_full_unstemmed Spike-triggered Clustering for Retinal Ganglion Cell Classification
title_short Spike-triggered Clustering for Retinal Ganglion Cell Classification
title_sort spike-triggered clustering for retinal ganglion cell classification
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7788309/
https://www.ncbi.nlm.nih.gov/pubmed/33321473
http://dx.doi.org/10.5607/en20029
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