Cargando…

Runs of homozygosity analysis of South African sheep breeds from various production systems investigated using OvineSNP50k data

BACKGROUND: Population history, production system and within-breed selection pressure impacts the genome architecture resulting in reduced genetic diversity and increased frequency of runs of homozygosity islands. This study tested the hypothesis that production systems geared towards specific trait...

Descripción completa

Detalles Bibliográficos
Autores principales:	Dzomba, E. F., Chimonyo, M., Pierneef, R., Muchadeyi, F. C.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7788743/ https://www.ncbi.nlm.nih.gov/pubmed/33407115 http://dx.doi.org/10.1186/s12864-020-07314-2

Ejemplares similares

Identification of QTLs for behavioral reactivity to social separation and humans in sheep using the OvineSNP50 BeadChip
por: Hazard, Dominique, et al.
Publicado: (2014)

Mapping genomic regions affecting milk traits in Sarda sheep by using the OvineSNP50 Beadchip and principal components to perform combined linkage and linkage disequilibrium analysis
por: Usai, Mario Graziano, et al.
Publicado: (2019)

Selection signature analysis and genome-wide divergence of South African Merino breeds from their founders
por: Dzomba, E. F., et al.
Publicado: (2023)

Carcass Quality Profiles and Associated Genomic Regions of South African Goat Populations Investigated Using Goat SNP50K Genotypes
por: Ncube, Keabetswe Tebogo, et al.
Publicado: (2022)

The distribution of runs of homozygosity and selection signatures in six commercial meat sheep breeds
por: Purfield, Deirdre C., et al.
Publicado: (2017)

Distribution of Runs of Homozygosity and Their Relationship with Candidate Genes for Productivity in Kazakh Meat–Wool Sheep Breed
por: Amandykova, Makpal, et al.
Publicado: (2023)

Runs of Homozygosity Revealed Reproductive Traits of Hu Sheep
por: Li, Yuzhe, et al.
Publicado: (2022)

An insight into the runs of homozygosity distribution and breed differentiation in Mangalitsa pigs
por: Addo, Sowah, et al.
Publicado: (2022)

Detection and Visualization of Heterozygosity-Rich Regions and Runs of Homozygosity in Worldwide Sheep Populations
por: Selli, Alana, et al.
Publicado: (2021)

Genome-Wide Characterization of Selection Signatures and Runs of Homozygosity in Ugandan Goat Breeds
por: Onzima, Robert B., et al.
Publicado: (2018)

Detection and replication of QTL underlying resistance to gastrointestinal nematodes in adult sheep using the ovine 50K SNP array
por: Atlija, Marina, et al.
Publicado: (2016)

Novel Graphical Analyses of Runs of Homozygosity among Species and Livestock Breeds
por: Iacolina, Laura, et al.
Publicado: (2016)

Genetics of Base Coat Colour Variations and Coat Colour-Patterns of the South African Nguni Cattle Investigated Using High-Density SNP Genotypes
por: Kunene, Langelihle Mbali, et al.
Publicado: (2022)

Runs of homozygosity reveal signatures of positive selection for reproduction traits in breed and non-breed horses
por: Metzger, Julia, et al.
Publicado: (2015)

Assessment and Distribution of Runs of Homozygosity in Horse Breeds Representing Different Utility Types
por: Szmatoła, Tomasz, et al.
Publicado: (2022)

Analysis of Conservation Priorities and Runs of Homozygosity Patterns for Chinese Indigenous Chicken Breeds
por: Gao, Chaoqun, et al.
Publicado: (2023)

Genome-wide landscape of runs of homozygosity and differentiation across Egyptian goat breeds
por: Sallam, Ahmed M., et al.
Publicado: (2023)

Genome-wide diversity and runs of homozygosity in the “Braque Français, type Pyrénées” dog breed
por: Mastrangelo, Salvatore, et al.
Publicado: (2018)

Genome-Wide Scan for Runs of Homozygosity Identifies Candidate Genes in Three Pig Breeds
por: Xie, Rui, et al.
Publicado: (2019)

Runs of homozygosity in the Italian goat breeds: impact of management practices in low-input systems
por: Cortellari, Matteo, et al.
Publicado: (2021)

Genome-wide detection of genetic structure and runs of homozygosity analysis in Anhui indigenous and Western commercial pig breeds using PorcineSNP80k data
por: Jiang, Yao, et al.
Publicado: (2022)

Assessing runs of Homozygosity: a comparison of SNP Array and whole genome sequence low coverage data
por: Ceballos, Francisco C., et al.
Publicado: (2018)

Patterns of homozygosity in insular and continental goat breeds
por: Cardoso, Taina F., et al.
Publicado: (2018)

Insight into the genetic composition of South African Sanga cattle using SNP data from cattle breeds worldwide
por: Makina, Sithembile O., et al.
Publicado: (2016)

Pedigree and genome-based patterns of homozygosity in the South African Ayrshire, Holstein, and Jersey breeds
por: Visser, Carina, et al.
Publicado: (2023)

KinSNP software for homozygosity mapping of disease genes using SNP microarrays
por: Amir, El-Ad David, et al.
Publicado: (2010)

A Comprehensive Analysis of Runs of Homozygosity of Eleven Cattle Breeds Representing Different Production Types
por: Szmatoła, Tomasz, et al.
Publicado: (2019)

Genome-Wide Assessment of Runs of Homozygosity by Whole-Genome Sequencing in Diverse Horse Breeds Worldwide
por: Chen, Chujie, et al.
Publicado: (2023)

Genomic prediction based on runs of homozygosity
por: Luan, Tu, et al.
Publicado: (2014)

Runs of homozygosity and population history in cattle
por: Purfield, Deirdre C, et al.
Publicado: (2012)

Runs of homozygosity and inbreeding in thyroid cancer
por: Thomsen, Hauke, et al.
Publicado: (2016)

Linkage Disequilibrium, Haplotype Block Structures, Effective Population Size and Genome-Wide Signatures of Selection of Two Conservation Herds of the South African Nguni Cattle
por: Dlamini, Njabulo M., et al.
Publicado: (2022)

A detailed characteristics of bias associated with long runs of homozygosity identification based on medium density SNP microarrays
por: Szmatoła, Tomasz, et al.
Publicado: (2020)

Characterization of runs of homozygosity, heterozygosity-enriched regions, and population structure in cattle populations selected for different breeding goals
por: Mulim, Henrique Alberto, et al.
Publicado: (2022)

Genome-Wide Analysis Revealed Homozygosity and Demographic History of Five Chinese Sheep Breeds Adapted to Different Environments
por: Abied, Adam, et al.
Publicado: (2020)

Genome-Wide Assessment of Runs of Homozygosity and Estimates of Genomic Inbreeding in a Chinese Composite Pig Breed
por: Xu, Zhong, et al.
Publicado: (2021)

Genome-Wide Estimates of Runs of Homozygosity, Heterozygosity, and Genetic Load in Two Chinese Indigenous Goat Breeds
por: Li, Guixin, et al.
Publicado: (2022)

Identification of Key Candidate Genes in Runs of Homozygosity of the Genome of Two Chicken Breeds, Associated with Cold Adaptation
por: Fedorova, Elena S., et al.
Publicado: (2022)

Comparative analysis of genomic inbreeding parameters and runs of homozygosity islands in several fancy and meat rabbit breeds
por: Ballan, Mohamad, et al.
Publicado: (2022)

Runs of Homozygosity Analysis Reveals Genomic Diversity and Population Structure of an Indigenous Cattle Breed in Southwest China
por: Wang, Wei, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_ssdqsd17drbh9jrc498ab74ttu