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PyConvU-Net: a lightweight and multiscale network for biomedical image segmentation

BACKGROUND: With the development of deep learning (DL), more and more methods based on deep learning are proposed and achieve state-of-the-art performance in biomedical image segmentation. However, these methods are usually complex and require the support of powerful computing resources. According t...

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Autores principales: Li, Changyong, Fan, Yongxian, Cai, Xiaodong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7788933/
https://www.ncbi.nlm.nih.gov/pubmed/33413088
http://dx.doi.org/10.1186/s12859-020-03943-2
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author Li, Changyong
Fan, Yongxian
Cai, Xiaodong
author_facet Li, Changyong
Fan, Yongxian
Cai, Xiaodong
author_sort Li, Changyong
collection PubMed
description BACKGROUND: With the development of deep learning (DL), more and more methods based on deep learning are proposed and achieve state-of-the-art performance in biomedical image segmentation. However, these methods are usually complex and require the support of powerful computing resources. According to the actual situation, it is impractical that we use huge computing resources in clinical situations. Thus, it is significant to develop accurate DL based biomedical image segmentation methods which depend on resources-constraint computing. RESULTS: A lightweight and multiscale network called PyConvU-Net is proposed to potentially work with low-resources computing. Through strictly controlled experiments, PyConvU-Net predictions have a good performance on three biomedical image segmentation tasks with the fewest parameters. CONCLUSIONS: Our experimental results preliminarily demonstrate the potential of proposed PyConvU-Net in biomedical image segmentation with resources-constraint computing.
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spelling pubmed-77889332021-01-07 PyConvU-Net: a lightweight and multiscale network for biomedical image segmentation Li, Changyong Fan, Yongxian Cai, Xiaodong BMC Bioinformatics Methodology Article BACKGROUND: With the development of deep learning (DL), more and more methods based on deep learning are proposed and achieve state-of-the-art performance in biomedical image segmentation. However, these methods are usually complex and require the support of powerful computing resources. According to the actual situation, it is impractical that we use huge computing resources in clinical situations. Thus, it is significant to develop accurate DL based biomedical image segmentation methods which depend on resources-constraint computing. RESULTS: A lightweight and multiscale network called PyConvU-Net is proposed to potentially work with low-resources computing. Through strictly controlled experiments, PyConvU-Net predictions have a good performance on three biomedical image segmentation tasks with the fewest parameters. CONCLUSIONS: Our experimental results preliminarily demonstrate the potential of proposed PyConvU-Net in biomedical image segmentation with resources-constraint computing. BioMed Central 2021-01-07 /pmc/articles/PMC7788933/ /pubmed/33413088 http://dx.doi.org/10.1186/s12859-020-03943-2 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Methodology Article
Li, Changyong
Fan, Yongxian
Cai, Xiaodong
PyConvU-Net: a lightweight and multiscale network for biomedical image segmentation
title PyConvU-Net: a lightweight and multiscale network for biomedical image segmentation
title_full PyConvU-Net: a lightweight and multiscale network for biomedical image segmentation
title_fullStr PyConvU-Net: a lightweight and multiscale network for biomedical image segmentation
title_full_unstemmed PyConvU-Net: a lightweight and multiscale network for biomedical image segmentation
title_short PyConvU-Net: a lightweight and multiscale network for biomedical image segmentation
title_sort pyconvu-net: a lightweight and multiscale network for biomedical image segmentation
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7788933/
https://www.ncbi.nlm.nih.gov/pubmed/33413088
http://dx.doi.org/10.1186/s12859-020-03943-2
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