Cargando…

The development of SSR markers based on RNA-sequencing and its validation between and within Carex L. species

BACKGROUND: Carex L. is one of the largest genera in the Cyperaceae family and an important vascular plant in the ecosystem. However, the genetic background of Carex is complex and the classification is not clear. In order to investigate the gene function annotation of Carex, RNA-sequencing analysis...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liu, Lingyun, Fan, Xifeng, Tan, Penghui, Wu, Juying, Zhang, Hui, Han, Chao, Chen, Chao, Xun, Lulu, Guo, Weier, Chang, Zhihui, Teng, Ke
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7789143/ https://www.ncbi.nlm.nih.gov/pubmed/33407132 http://dx.doi.org/10.1186/s12870-020-02792-8

Ejemplares similares

PacBio single-molecule long-read sequencing shed new light on the complexity of the Carex breviculmis transcriptome
por: Teng, Ke, et al.
Publicado: (2019)

Chloroplast genomes of four Carex species: Long repetitive sequences trigger dramatic changes in chloroplast genome structure
por: Xu, Shenjian, et al.
Publicado: (2023)

Development and characterization of EST‐SSR markers for Carex angustisquama (Cyperaceae), an extremophyte in solfatara fields
por: Nagasawa, Koki, et al.
Publicado: (2018)

Heterologous Expression of a Novel Zoysia japonica C(2)H(2) Zinc Finger Gene, ZjZFN1, Improved Salt Tolerance in Arabidopsis
por: Teng, Ke, et al.
Publicado: (2018)

Seed Germination Mechanism of Carex rigescens Under Variable Temperature Determinded Using Integrated Single-Molecule Long-Read and Illumina Sequence Analysis
por: Li, Hui, et al.
Publicado: (2022)

Carex diaoluoshanica (Carex sect. Lageniformes, Cyperaceae), a New Species from Hainan, China
por: Yang, Hubiao, et al.
Publicado: (2014)

Carex jianfengensis (Carex sect. Rhomboidales, Cyperaceae), a New Species from Hainan, China
por: Yang, Hubiao, et al.
Publicado: (2015)

Carex borealifujianica (Cyperaceae), a new species of the core Carex clade from Fujian, southeastern China
por: Lu, Yi-Fei, et al.
Publicado: (2022)

Fourteen polymorphic microsatellite markers for a widespread limestone endemic, Carex eburnea (Cyperaceae: Carex sect. Albae)(1)
por: Gillespie, Emily L., et al.
Publicado: (2017)

Chromosome-scale genome assemblies and annotations for Poales species Carex cristatella, Carex scoparia, Juncus effusus, and Juncus inflexus
por: Planta, Jose, et al.
Publicado: (2022)

Morphological variability and genetic diversity in Carex buxbaumii and Carex hartmaniorum (Cyperaceae) populations
por: Więcław, Helena, et al.
Publicado: (2021)

Draft genomes assembly and annotation of Carex parvula and Carex kokanica reveals stress-specific genes
por: Qu, Guangpeng, et al.
Publicado: (2022)

SSR2Marker: an integrated pipeline for identification of SSR markers within any two given genome-scale sequences
por: Yue, Junyang, et al.
Publicado: (2022)

Development of EST-SSR markers in Barringtonia racemosa (Lecythidaceae) and cross-amplification in related species(1)
por: Xie, Hongxian, et al.
Publicado: (2015)

Development and validation of SSR markers related to flower color based on full-length transcriptome sequencing in Chrysanthemum
por: Shi, Zhongya, et al.
Publicado: (2022)

The complete chloroplast genome of Carex agglomerata C. B. Clarke (Cyperaceae), an endemic species from China
por: Xun, Lu-Lu, et al.
Publicado: (2021)

Reclaiming to Brackish Wetlands in the Alberta Oil Sands: Comparison of Responses to Sodium Concentrations by Carex atherodes and Carex aquatilis
por: Glaeser, Lilyan C., et al.
Publicado: (2021)

Development and validation of EST-SSR markers for Fokienia hodginsii (Cupressaceae)(1)
por: Ding, Mingyan, et al.
Publicado: (2017)

Hybrid Origins of Carex rostrata var. borealis and C. stenolepis, Two Problematic Taxa in Carex Section Vesicariae (Cyperaceae)
por: M. Pedersen, A. Tiril, et al.
Publicado: (2016)

Genome mapping of white clover (Trifolium repens L.) and comparative analysis within the Trifolieae using cross-species SSR markers
por: Zhang, Yan, et al.
Publicado: (2007)

Notes on Carex (Cyperaceae) from China (IX): three new species of section Mitratae s.l.
por: Lu, Yi-Fei, et al.
Publicado: (2023)

Chromosome numbers of Carex (Cyperaceae) and their taxonomic implications
por: Więcław, Helena, et al.
Publicado: (2020)

An integrative monograph of Carex section Schoenoxiphium (Cyperaceae)
por: Luceño, Modesto, et al.
Publicado: (2021)

Development and validation of genic-SSR markers in sesame by RNA-seq
por: Zhang, Haiyang, et al.
Publicado: (2012)

Development and Validation of Gene-Based SSR Markers in the Genus Mesembryanthemum
por: Akash, Muhanad, et al.
Publicado: (2023)

Correction: Hybrid Origins of Carex rostrata var. borealis and C. stenolepis, Two Problematic Taxa in Carex Section Vesicariae (Cyperaceae)
por: Pedersen, A. Tiril M., et al.
Publicado: (2017)

Evaluation of Cross-Species Transferability of SSR Markers in Foeniculum vulgare
por: Aiello, Domenico, et al.
Publicado: (2020)

Cryptic Species Due to Hybridization: A Combined Approach to Describe a New Species (Carex: Cyperaceae)
por: Maguilla, Enrique, et al.
Publicado: (2016)

Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China
por: Wu, Mingying, et al.
Publicado: (2019)

Molecular characterization and validation of sunflower (Helianthus annuus L.) hybrids through SSR markers
por: Ahmed, Hafiz Ghulam Muhu-Din, et al.
Publicado: (2022)

Relationships among the A Genomes of Triticum L. Species as Evidenced by SSR Markers, in Iran
por: Ehtemam, Mohammad Hosein, et al.
Publicado: (2010)

Developmenrt of EST-SSR and genomic-SSR markers to assess genetic diversity in Jatropha Curcas L.
por: Wen, Mingfu, et al.
Publicado: (2010)

Correction: Cryptic Species Due to Hybridization: A Combined Approach to Describe a New Species (Carex: Cyperaceae)
por: Maguilla, Enrique, et al.
Publicado: (2017)

The complete chloroplast genome of Carex laevissima Nakai (Cyperaceae)
por: Ren, Wei, et al.
Publicado: (2022)

Preparation and characterization of carex meyeriana Kunthcellulose nanofibers by electrospinning
por: Sun, Ying, et al.
Publicado: (2022)

Response of Carex breviculmis to phosphorus deficiency and drought stress
por: Jiang, Songlin, et al.
Publicado: (2023)

Development of EST‐SSR markers for Pluchea indica (Asteraceae) and cross‐amplification in related species
por: Yang, Yi, et al.
Publicado: (2018)

Mining of SSR markers from Expressed Sequence Tags of bamboo species
por: Ramalakshmi, Oviya Iyappan, et al.
Publicado: (2010)

Transferability of Newly Developed Pear SSR Markers to Other Rosaceae Species
por: Fan, L., et al.
Publicado: (2013)

Genetic Diversity of Grasspea and Its Relative Species Revealed by SSR Markers
por: Wang, Fang, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_kh2lbna2lkdt2hd9900i72mtnj