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Improved selection of participants in genetic longevity studies: family scores revisited

BACKGROUND: Although human longevity tends to cluster within families, genetic studies on longevity have had limited success in identifying longevity loci. One of the main causes of this limited success is the selection of participants. Studies generally include sporadically long-lived individuals,...

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Autores principales: Rodríguez-Girondo, Mar, van den Berg, Niels, Hof, Michel H., Beekman, Marian, Slagboom, Eline
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7789146/
https://www.ncbi.nlm.nih.gov/pubmed/33407157
http://dx.doi.org/10.1186/s12874-020-01193-7
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author Rodríguez-Girondo, Mar
van den Berg, Niels
Hof, Michel H.
Beekman, Marian
Slagboom, Eline
author_facet Rodríguez-Girondo, Mar
van den Berg, Niels
Hof, Michel H.
Beekman, Marian
Slagboom, Eline
author_sort Rodríguez-Girondo, Mar
collection PubMed
description BACKGROUND: Although human longevity tends to cluster within families, genetic studies on longevity have had limited success in identifying longevity loci. One of the main causes of this limited success is the selection of participants. Studies generally include sporadically long-lived individuals, i.e. individuals with the longevity phenotype but without a genetic predisposition for longevity. The inclusion of these individuals causes phenotype heterogeneity which results in power reduction and bias. A way to avoid sporadically long-lived individuals and reduce sample heterogeneity is to include family history of longevity as selection criterion using a longevity family score. A main challenge when developing family scores are the large differences in family size, because of real differences in sibship sizes or because of missing data. METHODS: We discussed the statistical properties of two existing longevity family scores: the Family Longevity Selection Score (FLoSS) and the Longevity Relatives Count (LRC) score and we evaluated their performance dealing with differential family size. We proposed a new longevity family score, the mLRC score, an extension of the LRC based on random effects modeling, which is robust for family size and missing values. The performance of the new mLRC as selection tool was evaluated in an intensive simulation study and illustrated in a large real dataset, the Historical Sample of the Netherlands (HSN). RESULTS: Empirical scores such as the FLOSS and LRC cannot properly deal with differential family size and missing data. Our simulation study showed that mLRC is not affected by family size and provides more accurate selections of long-lived families. The analysis of 1105 sibships of the Historical Sample of the Netherlands showed that the selection of long-lived individuals based on the mLRC score predicts excess survival in the validation set better than the selection based on the LRC score . CONCLUSIONS: Model-based score systems such as the mLRC score help to reduce heterogeneity in the selection of long-lived families. The power of future studies into the genetics of longevity can likely be improved and their bias reduced, by selecting long-lived cases using the mLRC.
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spelling pubmed-77891462021-01-07 Improved selection of participants in genetic longevity studies: family scores revisited Rodríguez-Girondo, Mar van den Berg, Niels Hof, Michel H. Beekman, Marian Slagboom, Eline BMC Med Res Methodol Research Article BACKGROUND: Although human longevity tends to cluster within families, genetic studies on longevity have had limited success in identifying longevity loci. One of the main causes of this limited success is the selection of participants. Studies generally include sporadically long-lived individuals, i.e. individuals with the longevity phenotype but without a genetic predisposition for longevity. The inclusion of these individuals causes phenotype heterogeneity which results in power reduction and bias. A way to avoid sporadically long-lived individuals and reduce sample heterogeneity is to include family history of longevity as selection criterion using a longevity family score. A main challenge when developing family scores are the large differences in family size, because of real differences in sibship sizes or because of missing data. METHODS: We discussed the statistical properties of two existing longevity family scores: the Family Longevity Selection Score (FLoSS) and the Longevity Relatives Count (LRC) score and we evaluated their performance dealing with differential family size. We proposed a new longevity family score, the mLRC score, an extension of the LRC based on random effects modeling, which is robust for family size and missing values. The performance of the new mLRC as selection tool was evaluated in an intensive simulation study and illustrated in a large real dataset, the Historical Sample of the Netherlands (HSN). RESULTS: Empirical scores such as the FLOSS and LRC cannot properly deal with differential family size and missing data. Our simulation study showed that mLRC is not affected by family size and provides more accurate selections of long-lived families. The analysis of 1105 sibships of the Historical Sample of the Netherlands showed that the selection of long-lived individuals based on the mLRC score predicts excess survival in the validation set better than the selection based on the LRC score . CONCLUSIONS: Model-based score systems such as the mLRC score help to reduce heterogeneity in the selection of long-lived families. The power of future studies into the genetics of longevity can likely be improved and their bias reduced, by selecting long-lived cases using the mLRC. BioMed Central 2021-01-06 /pmc/articles/PMC7789146/ /pubmed/33407157 http://dx.doi.org/10.1186/s12874-020-01193-7 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Rodríguez-Girondo, Mar
van den Berg, Niels
Hof, Michel H.
Beekman, Marian
Slagboom, Eline
Improved selection of participants in genetic longevity studies: family scores revisited
title Improved selection of participants in genetic longevity studies: family scores revisited
title_full Improved selection of participants in genetic longevity studies: family scores revisited
title_fullStr Improved selection of participants in genetic longevity studies: family scores revisited
title_full_unstemmed Improved selection of participants in genetic longevity studies: family scores revisited
title_short Improved selection of participants in genetic longevity studies: family scores revisited
title_sort improved selection of participants in genetic longevity studies: family scores revisited
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7789146/
https://www.ncbi.nlm.nih.gov/pubmed/33407157
http://dx.doi.org/10.1186/s12874-020-01193-7
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