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FRZB as a key molecule in abdominal aortic aneurysm progression affecting vascular integrity
Abdominal aortic aneurysm (AAA), when ruptured, results in high mortality. The identification of molecular pathways involved in AAA progression is required to improve AAA prognosis. The aim of the present study was to assess the key genes for the progression of AAA and their functional role. Genomic...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Portland Press Ltd.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7789806/ https://www.ncbi.nlm.nih.gov/pubmed/33245093 http://dx.doi.org/10.1042/BSR20203204 |
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author | Oh, Chang-Kyu Ko, Yeji Park, Jeong Jun Heo, Hye Jin Kang, Junho Kwon, Eun Jung Kang, Ji Wan Lee, Yoonsung Myung, Kyungjae Kang, Jin Mo Ko, Dai Sik Kim, Yun Hak |
author_facet | Oh, Chang-Kyu Ko, Yeji Park, Jeong Jun Heo, Hye Jin Kang, Junho Kwon, Eun Jung Kang, Ji Wan Lee, Yoonsung Myung, Kyungjae Kang, Jin Mo Ko, Dai Sik Kim, Yun Hak |
author_sort | Oh, Chang-Kyu |
collection | PubMed |
description | Abdominal aortic aneurysm (AAA), when ruptured, results in high mortality. The identification of molecular pathways involved in AAA progression is required to improve AAA prognosis. The aim of the present study was to assess the key genes for the progression of AAA and their functional role. Genomic and clinical data of three independent cohorts were downloaded from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) (GSE57691, GSE7084, and GSE98278). To develop AAA diagnosis and progression-related differentially expressed genes (DEGs), we used a significance analysis of microarray (SAM). Spearman correlation test and gene set analysis were performed to identify potential enriched pathways for DEGs. Only the Frizzled-related protein (FRZB) gene and chromosome 1 open reading frame 24 (C1orf24) exhibited significant down-regulation in all analyses. With FRZB, the pathways were associated with RHO GTPase and elastin fiber formation. With C1orf24, the pathways were elastic fiber formation, extracellular matrix organization, and cell–cell communication. Since only FRZB was evolutionally conserved in the vertebrates, function of FRZB was validated using zebrafish embryos. Knockdown of frzb remarkably reduced vascular integrity in zebrafish embryos. We believe that FRZB is a key gene involved in AAA initiation and progression affecting vascular integrity. |
format | Online Article Text |
id | pubmed-7789806 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Portland Press Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77898062021-01-13 FRZB as a key molecule in abdominal aortic aneurysm progression affecting vascular integrity Oh, Chang-Kyu Ko, Yeji Park, Jeong Jun Heo, Hye Jin Kang, Junho Kwon, Eun Jung Kang, Ji Wan Lee, Yoonsung Myung, Kyungjae Kang, Jin Mo Ko, Dai Sik Kim, Yun Hak Biosci Rep Bioinformatics Abdominal aortic aneurysm (AAA), when ruptured, results in high mortality. The identification of molecular pathways involved in AAA progression is required to improve AAA prognosis. The aim of the present study was to assess the key genes for the progression of AAA and their functional role. Genomic and clinical data of three independent cohorts were downloaded from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) (GSE57691, GSE7084, and GSE98278). To develop AAA diagnosis and progression-related differentially expressed genes (DEGs), we used a significance analysis of microarray (SAM). Spearman correlation test and gene set analysis were performed to identify potential enriched pathways for DEGs. Only the Frizzled-related protein (FRZB) gene and chromosome 1 open reading frame 24 (C1orf24) exhibited significant down-regulation in all analyses. With FRZB, the pathways were associated with RHO GTPase and elastin fiber formation. With C1orf24, the pathways were elastic fiber formation, extracellular matrix organization, and cell–cell communication. Since only FRZB was evolutionally conserved in the vertebrates, function of FRZB was validated using zebrafish embryos. Knockdown of frzb remarkably reduced vascular integrity in zebrafish embryos. We believe that FRZB is a key gene involved in AAA initiation and progression affecting vascular integrity. Portland Press Ltd. 2021-01-06 /pmc/articles/PMC7789806/ /pubmed/33245093 http://dx.doi.org/10.1042/BSR20203204 Text en © 2021 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Bioinformatics Oh, Chang-Kyu Ko, Yeji Park, Jeong Jun Heo, Hye Jin Kang, Junho Kwon, Eun Jung Kang, Ji Wan Lee, Yoonsung Myung, Kyungjae Kang, Jin Mo Ko, Dai Sik Kim, Yun Hak FRZB as a key molecule in abdominal aortic aneurysm progression affecting vascular integrity |
title | FRZB as a key molecule in abdominal aortic aneurysm progression affecting vascular integrity |
title_full | FRZB as a key molecule in abdominal aortic aneurysm progression affecting vascular integrity |
title_fullStr | FRZB as a key molecule in abdominal aortic aneurysm progression affecting vascular integrity |
title_full_unstemmed | FRZB as a key molecule in abdominal aortic aneurysm progression affecting vascular integrity |
title_short | FRZB as a key molecule in abdominal aortic aneurysm progression affecting vascular integrity |
title_sort | frzb as a key molecule in abdominal aortic aneurysm progression affecting vascular integrity |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7789806/ https://www.ncbi.nlm.nih.gov/pubmed/33245093 http://dx.doi.org/10.1042/BSR20203204 |
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