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A new risk factor indicator for papillary thyroid cancer based on immune infiltration

Increasing evidence has indicated a close association between immune infiltration in cancer and clinical outcomes. However, related research in thyroid cancer is still deficient. Our research comprehensively investigated the immune infiltration of thyroid cancer. Data derived from TCGA and GEO datab...

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Autores principales: Yang, Zhou, Wei, Xiyi, Pan, Yitong, Xu, Jingyuan, Si, Yan, Min, Zhijun, Yu, Bo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791058/
https://www.ncbi.nlm.nih.gov/pubmed/33414407
http://dx.doi.org/10.1038/s41419-020-03294-z
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author Yang, Zhou
Wei, Xiyi
Pan, Yitong
Xu, Jingyuan
Si, Yan
Min, Zhijun
Yu, Bo
author_facet Yang, Zhou
Wei, Xiyi
Pan, Yitong
Xu, Jingyuan
Si, Yan
Min, Zhijun
Yu, Bo
author_sort Yang, Zhou
collection PubMed
description Increasing evidence has indicated a close association between immune infiltration in cancer and clinical outcomes. However, related research in thyroid cancer is still deficient. Our research comprehensively investigated the immune infiltration of thyroid cancer. Data derived from TCGA and GEO databases were analyzed by the CIBERSORT, ESTIMATE, and EPIC algorithms. The CIBERSORT algorithm calculates the proportions of 22 types of immune cells. ESTIMATE algorithm calculates a stromal score to represent all stromal cells in cancer. The EPIC algorithm calculates the proportions of cancer-associated fibroblasts (CAFs) and endothelial cells (ECs), which are the main components of stromal cells. We analyzed the correlation of immune infiltration with clinical characteristics and outcomes of patients. We determined that the infiltration of CD8(+) T cells improved the survival of thyroid cancer patients. Overexpression of immune checkpoints was closely related to the development of thyroid cancer. In general, stromal cells were associated with the progression of thyroid cancer. Interestingly, CAFs and ECs had opposite roles in this process. In addition, the BRAF(V600E) mutation was related to the upregulation of immune checkpoints and CAFs and the downregulation of CD8(+) T cells and ECs. Finally, we constructed an immune risk score model to predict the prognosis and development of thyroid cancer. Our research demonstrated a comprehensive panorama of immune infiltration in thyroid cancer, which may provide potential value for immunotherapy.
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spelling pubmed-77910582021-01-15 A new risk factor indicator for papillary thyroid cancer based on immune infiltration Yang, Zhou Wei, Xiyi Pan, Yitong Xu, Jingyuan Si, Yan Min, Zhijun Yu, Bo Cell Death Dis Article Increasing evidence has indicated a close association between immune infiltration in cancer and clinical outcomes. However, related research in thyroid cancer is still deficient. Our research comprehensively investigated the immune infiltration of thyroid cancer. Data derived from TCGA and GEO databases were analyzed by the CIBERSORT, ESTIMATE, and EPIC algorithms. The CIBERSORT algorithm calculates the proportions of 22 types of immune cells. ESTIMATE algorithm calculates a stromal score to represent all stromal cells in cancer. The EPIC algorithm calculates the proportions of cancer-associated fibroblasts (CAFs) and endothelial cells (ECs), which are the main components of stromal cells. We analyzed the correlation of immune infiltration with clinical characteristics and outcomes of patients. We determined that the infiltration of CD8(+) T cells improved the survival of thyroid cancer patients. Overexpression of immune checkpoints was closely related to the development of thyroid cancer. In general, stromal cells were associated with the progression of thyroid cancer. Interestingly, CAFs and ECs had opposite roles in this process. In addition, the BRAF(V600E) mutation was related to the upregulation of immune checkpoints and CAFs and the downregulation of CD8(+) T cells and ECs. Finally, we constructed an immune risk score model to predict the prognosis and development of thyroid cancer. Our research demonstrated a comprehensive panorama of immune infiltration in thyroid cancer, which may provide potential value for immunotherapy. Nature Publishing Group UK 2021-01-06 /pmc/articles/PMC7791058/ /pubmed/33414407 http://dx.doi.org/10.1038/s41419-020-03294-z Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Yang, Zhou
Wei, Xiyi
Pan, Yitong
Xu, Jingyuan
Si, Yan
Min, Zhijun
Yu, Bo
A new risk factor indicator for papillary thyroid cancer based on immune infiltration
title A new risk factor indicator for papillary thyroid cancer based on immune infiltration
title_full A new risk factor indicator for papillary thyroid cancer based on immune infiltration
title_fullStr A new risk factor indicator for papillary thyroid cancer based on immune infiltration
title_full_unstemmed A new risk factor indicator for papillary thyroid cancer based on immune infiltration
title_short A new risk factor indicator for papillary thyroid cancer based on immune infiltration
title_sort new risk factor indicator for papillary thyroid cancer based on immune infiltration
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791058/
https://www.ncbi.nlm.nih.gov/pubmed/33414407
http://dx.doi.org/10.1038/s41419-020-03294-z
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