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Introducing a drift and diffusion framework for childhood growth research
Background: Growth trajectories are highly variable between children, making epidemiological analyses challenging both to the identification of malnutrition interventions at the population level and also risk assessment at individual level. We introduce stochastic differential equation (SDE) models...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000 Research Limited
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791186/ https://www.ncbi.nlm.nih.gov/pubmed/33490877 http://dx.doi.org/10.12688/gatesopenres.13123.2 |
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author | Lewis, Fraser I Guga, Godfrey Mdoe, Paschal Mduma, Esto Mahopo, Cloupas Bessong, Pascal Richard, Stephanie A McCormick, Benjamin J J |
author_facet | Lewis, Fraser I Guga, Godfrey Mdoe, Paschal Mduma, Esto Mahopo, Cloupas Bessong, Pascal Richard, Stephanie A McCormick, Benjamin J J |
author_sort | Lewis, Fraser I |
collection | PubMed |
description | Background: Growth trajectories are highly variable between children, making epidemiological analyses challenging both to the identification of malnutrition interventions at the population level and also risk assessment at individual level. We introduce stochastic differential equation (SDE) models into child growth research. SDEs describe flexible dynamic processes comprising: drift - gradual smooth changes – such as physiology or gut microbiome, and diffusion - sudden perturbations, such as illness or infection. Methods: We present a case study applying SDE models to child growth trajectory data from the Haydom, Tanzania and Venda, South Africa sites within the MAL-ED cohort. These data comprise n=460 children aged 0-24 months. A comparison with classical curve fitting (linear mixed models) is also presented. Results: The SDE models offered a wide range of new flexible shapes and parameterizations compared to classical additive models, with performance as good or better than standard approaches. The predictions from the SDE models suggest distinct longitudinal clusters that form distinct ‘streams’ hidden by the large between-child variability. Conclusions: Using SDE models to predict future growth trajectories revealed new insights in the observed data, where trajectories appear to cluster together in bands, which may have a future risk assessment application. SDEs offer an attractive approach for child growth modelling and potentially offer new insights. |
format | Online Article Text |
id | pubmed-7791186 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | F1000 Research Limited |
record_format | MEDLINE/PubMed |
spelling | pubmed-77911862021-01-22 Introducing a drift and diffusion framework for childhood growth research Lewis, Fraser I Guga, Godfrey Mdoe, Paschal Mduma, Esto Mahopo, Cloupas Bessong, Pascal Richard, Stephanie A McCormick, Benjamin J J Gates Open Res Research Article Background: Growth trajectories are highly variable between children, making epidemiological analyses challenging both to the identification of malnutrition interventions at the population level and also risk assessment at individual level. We introduce stochastic differential equation (SDE) models into child growth research. SDEs describe flexible dynamic processes comprising: drift - gradual smooth changes – such as physiology or gut microbiome, and diffusion - sudden perturbations, such as illness or infection. Methods: We present a case study applying SDE models to child growth trajectory data from the Haydom, Tanzania and Venda, South Africa sites within the MAL-ED cohort. These data comprise n=460 children aged 0-24 months. A comparison with classical curve fitting (linear mixed models) is also presented. Results: The SDE models offered a wide range of new flexible shapes and parameterizations compared to classical additive models, with performance as good or better than standard approaches. The predictions from the SDE models suggest distinct longitudinal clusters that form distinct ‘streams’ hidden by the large between-child variability. Conclusions: Using SDE models to predict future growth trajectories revealed new insights in the observed data, where trajectories appear to cluster together in bands, which may have a future risk assessment application. SDEs offer an attractive approach for child growth modelling and potentially offer new insights. F1000 Research Limited 2020-11-26 /pmc/articles/PMC7791186/ /pubmed/33490877 http://dx.doi.org/10.12688/gatesopenres.13123.2 Text en Copyright: © 2020 Lewis FI et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Lewis, Fraser I Guga, Godfrey Mdoe, Paschal Mduma, Esto Mahopo, Cloupas Bessong, Pascal Richard, Stephanie A McCormick, Benjamin J J Introducing a drift and diffusion framework for childhood growth research |
title | Introducing a drift and diffusion framework for childhood growth research |
title_full | Introducing a drift and diffusion framework for childhood growth research |
title_fullStr | Introducing a drift and diffusion framework for childhood growth research |
title_full_unstemmed | Introducing a drift and diffusion framework for childhood growth research |
title_short | Introducing a drift and diffusion framework for childhood growth research |
title_sort | introducing a drift and diffusion framework for childhood growth research |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791186/ https://www.ncbi.nlm.nih.gov/pubmed/33490877 http://dx.doi.org/10.12688/gatesopenres.13123.2 |
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