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Development of a prognostic model based on an immunogenomic landscape analysis of medulloblastoma

Medulloblastoma (MB) is one of the most common central nervous system tumors in children. At present, the vital role of immune abnormalities has been proved in tumorigenesis and progression. However, the immune mechanism in MB is still poorly understood. In the present study, 51 differentially expre...

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Autores principales: Guo, Yuduo, Li, Shenglun, Huang, Peng, Zhang, Hongwei, Yu, Chunjiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791544/
https://www.ncbi.nlm.nih.gov/pubmed/33345275
http://dx.doi.org/10.1042/BSR20202907
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author Guo, Yuduo
Li, Shenglun
Huang, Peng
Zhang, Hongwei
Yu, Chunjiang
author_facet Guo, Yuduo
Li, Shenglun
Huang, Peng
Zhang, Hongwei
Yu, Chunjiang
author_sort Guo, Yuduo
collection PubMed
description Medulloblastoma (MB) is one of the most common central nervous system tumors in children. At present, the vital role of immune abnormalities has been proved in tumorigenesis and progression. However, the immune mechanism in MB is still poorly understood. In the present study, 51 differentially expressed immune-related genes (DE-IRGs) and 226 survival associated immune-related genes (Sur-IRGs) were screened by an integrated analysis of multi-array. Moreover, the potential pathways were enriched by functional analysis, such as ‘cytokine–cytokine receptor interaction’, ‘Ras signaling pathway’, ‘PI3K-Akt signaling pathway’ and ‘pathways in cancer’. Furthermore, 10 core IRGs were identified from DE-IRGs and Sur-IRGs. And the potential regulatory mechanisms of core IRGs were also explored. Additionally, a new prognostic model, including 7 genes (HDGF, CSK, PNOC, S100A13, RORB, FPR1, and ICAM2) based on IRGs, was established by multivariable COX analysis. In summary, our study revealed the underlying immune mechanism of MB. Moreover, we developed a prognostic model associated with clinical characteristics and could reflect the infiltration of immune cells.
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spelling pubmed-77915442021-02-04 Development of a prognostic model based on an immunogenomic landscape analysis of medulloblastoma Guo, Yuduo Li, Shenglun Huang, Peng Zhang, Hongwei Yu, Chunjiang Biosci Rep Cancer Medulloblastoma (MB) is one of the most common central nervous system tumors in children. At present, the vital role of immune abnormalities has been proved in tumorigenesis and progression. However, the immune mechanism in MB is still poorly understood. In the present study, 51 differentially expressed immune-related genes (DE-IRGs) and 226 survival associated immune-related genes (Sur-IRGs) were screened by an integrated analysis of multi-array. Moreover, the potential pathways were enriched by functional analysis, such as ‘cytokine–cytokine receptor interaction’, ‘Ras signaling pathway’, ‘PI3K-Akt signaling pathway’ and ‘pathways in cancer’. Furthermore, 10 core IRGs were identified from DE-IRGs and Sur-IRGs. And the potential regulatory mechanisms of core IRGs were also explored. Additionally, a new prognostic model, including 7 genes (HDGF, CSK, PNOC, S100A13, RORB, FPR1, and ICAM2) based on IRGs, was established by multivariable COX analysis. In summary, our study revealed the underlying immune mechanism of MB. Moreover, we developed a prognostic model associated with clinical characteristics and could reflect the infiltration of immune cells. Portland Press Ltd. 2021-01-07 /pmc/articles/PMC7791544/ /pubmed/33345275 http://dx.doi.org/10.1042/BSR20202907 Text en © 2021 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Cancer
Guo, Yuduo
Li, Shenglun
Huang, Peng
Zhang, Hongwei
Yu, Chunjiang
Development of a prognostic model based on an immunogenomic landscape analysis of medulloblastoma
title Development of a prognostic model based on an immunogenomic landscape analysis of medulloblastoma
title_full Development of a prognostic model based on an immunogenomic landscape analysis of medulloblastoma
title_fullStr Development of a prognostic model based on an immunogenomic landscape analysis of medulloblastoma
title_full_unstemmed Development of a prognostic model based on an immunogenomic landscape analysis of medulloblastoma
title_short Development of a prognostic model based on an immunogenomic landscape analysis of medulloblastoma
title_sort development of a prognostic model based on an immunogenomic landscape analysis of medulloblastoma
topic Cancer
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791544/
https://www.ncbi.nlm.nih.gov/pubmed/33345275
http://dx.doi.org/10.1042/BSR20202907
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