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Uronic acid metabolic process–related gene expression–based signature predicts overall survival of glioma

Glioma is the most common and malignant cancer of the central nervous system, and the prognosis is poor. Metabolic reprogramming is a common phenomenon that plays an important role in tumor progression including gliomas. Searching the representative process among numerous metabolic processes to eval...

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Autores principales: Feng, Yuemei, Li, Guanzhang, Shi, Zhongfang, Yan, Xu, Li, Renpeng, Zhai, You, Chang, Yuanhao, Wang, Di, Kahlert, Ulf Dietrich, Zhang, Wei, Yuan, Fang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791545/
https://www.ncbi.nlm.nih.gov/pubmed/33324981
http://dx.doi.org/10.1042/BSR20203051
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author Feng, Yuemei
Li, Guanzhang
Shi, Zhongfang
Yan, Xu
Li, Renpeng
Zhai, You
Chang, Yuanhao
Wang, Di
Kahlert, Ulf Dietrich
Zhang, Wei
Yuan, Fang
author_facet Feng, Yuemei
Li, Guanzhang
Shi, Zhongfang
Yan, Xu
Li, Renpeng
Zhai, You
Chang, Yuanhao
Wang, Di
Kahlert, Ulf Dietrich
Zhang, Wei
Yuan, Fang
author_sort Feng, Yuemei
collection PubMed
description Glioma is the most common and malignant cancer of the central nervous system, and the prognosis is poor. Metabolic reprogramming is a common phenomenon that plays an important role in tumor progression including gliomas. Searching the representative process among numerous metabolic processes to evaluate the prognosis aside from the glycolytic pathway may be of great significance. A novel prediction signature was constructed in the present study based on gene expression. A total of 1027 glioma samples with clinical and RNA-seq data were used in the present study. Lasso-Cox, gene set variation analysis, Kaplan–Meier survival curve analysis, Cox regression, receiver operating characteristic curve, and elastic net were performed for constructing and verifying predictive models. The R programming language was used as the main tool for statistical analysis and graphical work. This signature was found to be stable in prognostic prediction in the Chinese Glioma Genome Atlas Network and the Cancer Genome Atlas databases. The possible mechanism was also explored, revealing that the aforementioned signature was closely related to DNA replication and ATP binding. In summary, a prognosis prediction signature for patients with glioma based on five genes was constructed and showed great potential for clinical application.
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spelling pubmed-77915452021-02-04 Uronic acid metabolic process–related gene expression–based signature predicts overall survival of glioma Feng, Yuemei Li, Guanzhang Shi, Zhongfang Yan, Xu Li, Renpeng Zhai, You Chang, Yuanhao Wang, Di Kahlert, Ulf Dietrich Zhang, Wei Yuan, Fang Biosci Rep Cancer Glioma is the most common and malignant cancer of the central nervous system, and the prognosis is poor. Metabolic reprogramming is a common phenomenon that plays an important role in tumor progression including gliomas. Searching the representative process among numerous metabolic processes to evaluate the prognosis aside from the glycolytic pathway may be of great significance. A novel prediction signature was constructed in the present study based on gene expression. A total of 1027 glioma samples with clinical and RNA-seq data were used in the present study. Lasso-Cox, gene set variation analysis, Kaplan–Meier survival curve analysis, Cox regression, receiver operating characteristic curve, and elastic net were performed for constructing and verifying predictive models. The R programming language was used as the main tool for statistical analysis and graphical work. This signature was found to be stable in prognostic prediction in the Chinese Glioma Genome Atlas Network and the Cancer Genome Atlas databases. The possible mechanism was also explored, revealing that the aforementioned signature was closely related to DNA replication and ATP binding. In summary, a prognosis prediction signature for patients with glioma based on five genes was constructed and showed great potential for clinical application. Portland Press Ltd. 2021-01-07 /pmc/articles/PMC7791545/ /pubmed/33324981 http://dx.doi.org/10.1042/BSR20203051 Text en © 2021 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Cancer
Feng, Yuemei
Li, Guanzhang
Shi, Zhongfang
Yan, Xu
Li, Renpeng
Zhai, You
Chang, Yuanhao
Wang, Di
Kahlert, Ulf Dietrich
Zhang, Wei
Yuan, Fang
Uronic acid metabolic process–related gene expression–based signature predicts overall survival of glioma
title Uronic acid metabolic process–related gene expression–based signature predicts overall survival of glioma
title_full Uronic acid metabolic process–related gene expression–based signature predicts overall survival of glioma
title_fullStr Uronic acid metabolic process–related gene expression–based signature predicts overall survival of glioma
title_full_unstemmed Uronic acid metabolic process–related gene expression–based signature predicts overall survival of glioma
title_short Uronic acid metabolic process–related gene expression–based signature predicts overall survival of glioma
title_sort uronic acid metabolic process–related gene expression–based signature predicts overall survival of glioma
topic Cancer
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791545/
https://www.ncbi.nlm.nih.gov/pubmed/33324981
http://dx.doi.org/10.1042/BSR20203051
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