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Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials
Purpose: We describe the creation of computational models of lung pathologies indicative of COVID-19 disease. The models are intended for use in virtual clinical trials (VCT) for task-specific optimization of chest x-ray (CXR) imaging. Approach: Images of COVID-19 patients confirmed by computed tomo...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society of Photo-Optical Instrumentation Engineers
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791575/ https://www.ncbi.nlm.nih.gov/pubmed/33447646 http://dx.doi.org/10.1117/1.JMI.8.S1.013501 |
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author | Rodríguez Pérez, Sunay Coolen, Johan Marshall, Nicholas W. Cockmartin, Lesley Biebaû, Charlotte Desmet, Jeroen De Wever, Walter Struelens, Lara Bosmans, Hilde |
author_facet | Rodríguez Pérez, Sunay Coolen, Johan Marshall, Nicholas W. Cockmartin, Lesley Biebaû, Charlotte Desmet, Jeroen De Wever, Walter Struelens, Lara Bosmans, Hilde |
author_sort | Rodríguez Pérez, Sunay |
collection | PubMed |
description | Purpose: We describe the creation of computational models of lung pathologies indicative of COVID-19 disease. The models are intended for use in virtual clinical trials (VCT) for task-specific optimization of chest x-ray (CXR) imaging. Approach: Images of COVID-19 patients confirmed by computed tomography were used to segment areas of increased attenuation in the lungs, all compatible with ground glass opacities and consolidations. Using a modeling methodology, the segmented pathologies were converted to polygonal meshes and adapted to fit the lungs of a previously developed polygonal mesh thorax phantom. The models were then voxelized with a resolution of [Formula: see text] and used as input in a simulation framework to generate radiographic images. Primary projections were generated via ray tracing while the Monte Carlo transport code was used for the scattered radiation. Realistic sharpness and noise characteristics were also simulated, followed by clinical image processing. Example images generated at 120 kVp were used for the validation of the models in a reader study. Additionally, images were uploaded to an Artificial Intelligence (AI) software for the detection of COVID-19. Results: Nine models of COVID-19 associated pathologies were created, covering a range of disease severity. The realism of the models was confirmed by experienced radiologists and by dedicated AI software. Conclusions: A methodology has been developed for the rapid generation of realistic 3D models of a large range of COVID-19 pathologies. The modeling framework can be used as the basis for VCTs for testing detection and triaging of COVID-19 suspected cases. |
format | Online Article Text |
id | pubmed-7791575 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Society of Photo-Optical Instrumentation Engineers |
record_format | MEDLINE/PubMed |
spelling | pubmed-77915752021-02-08 Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials Rodríguez Pérez, Sunay Coolen, Johan Marshall, Nicholas W. Cockmartin, Lesley Biebaû, Charlotte Desmet, Jeroen De Wever, Walter Struelens, Lara Bosmans, Hilde J Med Imaging (Bellingham) Physics of Medical Imaging Purpose: We describe the creation of computational models of lung pathologies indicative of COVID-19 disease. The models are intended for use in virtual clinical trials (VCT) for task-specific optimization of chest x-ray (CXR) imaging. Approach: Images of COVID-19 patients confirmed by computed tomography were used to segment areas of increased attenuation in the lungs, all compatible with ground glass opacities and consolidations. Using a modeling methodology, the segmented pathologies were converted to polygonal meshes and adapted to fit the lungs of a previously developed polygonal mesh thorax phantom. The models were then voxelized with a resolution of [Formula: see text] and used as input in a simulation framework to generate radiographic images. Primary projections were generated via ray tracing while the Monte Carlo transport code was used for the scattered radiation. Realistic sharpness and noise characteristics were also simulated, followed by clinical image processing. Example images generated at 120 kVp were used for the validation of the models in a reader study. Additionally, images were uploaded to an Artificial Intelligence (AI) software for the detection of COVID-19. Results: Nine models of COVID-19 associated pathologies were created, covering a range of disease severity. The realism of the models was confirmed by experienced radiologists and by dedicated AI software. Conclusions: A methodology has been developed for the rapid generation of realistic 3D models of a large range of COVID-19 pathologies. The modeling framework can be used as the basis for VCTs for testing detection and triaging of COVID-19 suspected cases. Society of Photo-Optical Instrumentation Engineers 2021-01-04 2021-01 /pmc/articles/PMC7791575/ /pubmed/33447646 http://dx.doi.org/10.1117/1.JMI.8.S1.013501 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/ Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI. |
spellingShingle | Physics of Medical Imaging Rodríguez Pérez, Sunay Coolen, Johan Marshall, Nicholas W. Cockmartin, Lesley Biebaû, Charlotte Desmet, Jeroen De Wever, Walter Struelens, Lara Bosmans, Hilde Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials |
title | Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials |
title_full | Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials |
title_fullStr | Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials |
title_full_unstemmed | Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials |
title_short | Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials |
title_sort | methodology to create 3d models of covid-19 pathologies for virtual clinical trials |
topic | Physics of Medical Imaging |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791575/ https://www.ncbi.nlm.nih.gov/pubmed/33447646 http://dx.doi.org/10.1117/1.JMI.8.S1.013501 |
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