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Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials

Purpose: We describe the creation of computational models of lung pathologies indicative of COVID-19 disease. The models are intended for use in virtual clinical trials (VCT) for task-specific optimization of chest x-ray (CXR) imaging. Approach: Images of COVID-19 patients confirmed by computed tomo...

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Autores principales: Rodríguez Pérez, Sunay, Coolen, Johan, Marshall, Nicholas W., Cockmartin, Lesley, Biebaû, Charlotte, Desmet, Jeroen, De Wever, Walter, Struelens, Lara, Bosmans, Hilde
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society of Photo-Optical Instrumentation Engineers 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791575/
https://www.ncbi.nlm.nih.gov/pubmed/33447646
http://dx.doi.org/10.1117/1.JMI.8.S1.013501
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author Rodríguez Pérez, Sunay
Coolen, Johan
Marshall, Nicholas W.
Cockmartin, Lesley
Biebaû, Charlotte
Desmet, Jeroen
De Wever, Walter
Struelens, Lara
Bosmans, Hilde
author_facet Rodríguez Pérez, Sunay
Coolen, Johan
Marshall, Nicholas W.
Cockmartin, Lesley
Biebaû, Charlotte
Desmet, Jeroen
De Wever, Walter
Struelens, Lara
Bosmans, Hilde
author_sort Rodríguez Pérez, Sunay
collection PubMed
description Purpose: We describe the creation of computational models of lung pathologies indicative of COVID-19 disease. The models are intended for use in virtual clinical trials (VCT) for task-specific optimization of chest x-ray (CXR) imaging. Approach: Images of COVID-19 patients confirmed by computed tomography were used to segment areas of increased attenuation in the lungs, all compatible with ground glass opacities and consolidations. Using a modeling methodology, the segmented pathologies were converted to polygonal meshes and adapted to fit the lungs of a previously developed polygonal mesh thorax phantom. The models were then voxelized with a resolution of [Formula: see text] and used as input in a simulation framework to generate radiographic images. Primary projections were generated via ray tracing while the Monte Carlo transport code was used for the scattered radiation. Realistic sharpness and noise characteristics were also simulated, followed by clinical image processing. Example images generated at 120 kVp were used for the validation of the models in a reader study. Additionally, images were uploaded to an Artificial Intelligence (AI) software for the detection of COVID-19. Results: Nine models of COVID-19 associated pathologies were created, covering a range of disease severity. The realism of the models was confirmed by experienced radiologists and by dedicated AI software. Conclusions: A methodology has been developed for the rapid generation of realistic 3D models of a large range of COVID-19 pathologies. The modeling framework can be used as the basis for VCTs for testing detection and triaging of COVID-19 suspected cases.
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spelling pubmed-77915752021-02-08 Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials Rodríguez Pérez, Sunay Coolen, Johan Marshall, Nicholas W. Cockmartin, Lesley Biebaû, Charlotte Desmet, Jeroen De Wever, Walter Struelens, Lara Bosmans, Hilde J Med Imaging (Bellingham) Physics of Medical Imaging Purpose: We describe the creation of computational models of lung pathologies indicative of COVID-19 disease. The models are intended for use in virtual clinical trials (VCT) for task-specific optimization of chest x-ray (CXR) imaging. Approach: Images of COVID-19 patients confirmed by computed tomography were used to segment areas of increased attenuation in the lungs, all compatible with ground glass opacities and consolidations. Using a modeling methodology, the segmented pathologies were converted to polygonal meshes and adapted to fit the lungs of a previously developed polygonal mesh thorax phantom. The models were then voxelized with a resolution of [Formula: see text] and used as input in a simulation framework to generate radiographic images. Primary projections were generated via ray tracing while the Monte Carlo transport code was used for the scattered radiation. Realistic sharpness and noise characteristics were also simulated, followed by clinical image processing. Example images generated at 120 kVp were used for the validation of the models in a reader study. Additionally, images were uploaded to an Artificial Intelligence (AI) software for the detection of COVID-19. Results: Nine models of COVID-19 associated pathologies were created, covering a range of disease severity. The realism of the models was confirmed by experienced radiologists and by dedicated AI software. Conclusions: A methodology has been developed for the rapid generation of realistic 3D models of a large range of COVID-19 pathologies. The modeling framework can be used as the basis for VCTs for testing detection and triaging of COVID-19 suspected cases. Society of Photo-Optical Instrumentation Engineers 2021-01-04 2021-01 /pmc/articles/PMC7791575/ /pubmed/33447646 http://dx.doi.org/10.1117/1.JMI.8.S1.013501 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/ Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
spellingShingle Physics of Medical Imaging
Rodríguez Pérez, Sunay
Coolen, Johan
Marshall, Nicholas W.
Cockmartin, Lesley
Biebaû, Charlotte
Desmet, Jeroen
De Wever, Walter
Struelens, Lara
Bosmans, Hilde
Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials
title Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials
title_full Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials
title_fullStr Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials
title_full_unstemmed Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials
title_short Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials
title_sort methodology to create 3d models of covid-19 pathologies for virtual clinical trials
topic Physics of Medical Imaging
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791575/
https://www.ncbi.nlm.nih.gov/pubmed/33447646
http://dx.doi.org/10.1117/1.JMI.8.S1.013501
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