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CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer

Background: In recent years, the annual incidence of thyroid cancer (TC) has increased, with papillary thyroid cancer (PTC) identified as the most commonwinwordpathological type accounting for approximately 80% of all thyroid cancer cases. The tumor microenvironment is known to play a vital role in...

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Autores principales: Qin, Xiao-Jing, Lin, Xu, Xue, Gang, Fan, Hui-Li, Wang, Hao-Yu, Wu, Jing-Fang, Pei, Da
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791606/
https://www.ncbi.nlm.nih.gov/pubmed/33345267
http://dx.doi.org/10.1042/BSR20203459
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author Qin, Xiao-Jing
Lin, Xu
Xue, Gang
Fan, Hui-Li
Wang, Hao-Yu
Wu, Jing-Fang
Pei, Da
author_facet Qin, Xiao-Jing
Lin, Xu
Xue, Gang
Fan, Hui-Li
Wang, Hao-Yu
Wu, Jing-Fang
Pei, Da
author_sort Qin, Xiao-Jing
collection PubMed
description Background: In recent years, the annual incidence of thyroid cancer (TC) has increased, with papillary thyroid cancer (PTC) identified as the most commonwinwordpathological type accounting for approximately 80% of all thyroid cancer cases. The tumor microenvironment is known to play a vital role in tumor information transmission and immune detection. Methods: In the present study, we examined gene expression data from 518 patients with PTC. The ESTIMATE algorithm was used to calculate immune and stromal scores of PTC patients. Based on a protein–protein interaction (PPI) network, functional enrichment and overall survival analyses, C-X-C motif chemokine ligand 10 (CXCL10) was identified as a core gene. We further investigated the roles of core genes of PTC in the tumor immune microenvironment using LinkedOmics, GSEA, and TIMER tools. Results: Immune, stromal and ESTIMATE scores were related to clinicopathological variables of patients with PTC, but not survival outcomes. Eight differentially expressed genes (DEGs) were associated with survival outcome. In addition, immunochemical staining experiments revealed lower expression of CXCL10 in PTC than paracancerous tissues. GSEA pathway enrichment analysis revealed downregulation of CXCL10 in multiple cancer pathways. CXCL10 and related genes were enriched in pathways related to adaptive immune response, cellular defense response and regulation of innate immune response. Conclusion: The tumor microenvironment plays a critical role in development of PTC and CXCL10 may serve as a novel target of precision therapy for this patient population.
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spelling pubmed-77916062021-02-04 CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer Qin, Xiao-Jing Lin, Xu Xue, Gang Fan, Hui-Li Wang, Hao-Yu Wu, Jing-Fang Pei, Da Biosci Rep Bioinformatics Background: In recent years, the annual incidence of thyroid cancer (TC) has increased, with papillary thyroid cancer (PTC) identified as the most commonwinwordpathological type accounting for approximately 80% of all thyroid cancer cases. The tumor microenvironment is known to play a vital role in tumor information transmission and immune detection. Methods: In the present study, we examined gene expression data from 518 patients with PTC. The ESTIMATE algorithm was used to calculate immune and stromal scores of PTC patients. Based on a protein–protein interaction (PPI) network, functional enrichment and overall survival analyses, C-X-C motif chemokine ligand 10 (CXCL10) was identified as a core gene. We further investigated the roles of core genes of PTC in the tumor immune microenvironment using LinkedOmics, GSEA, and TIMER tools. Results: Immune, stromal and ESTIMATE scores were related to clinicopathological variables of patients with PTC, but not survival outcomes. Eight differentially expressed genes (DEGs) were associated with survival outcome. In addition, immunochemical staining experiments revealed lower expression of CXCL10 in PTC than paracancerous tissues. GSEA pathway enrichment analysis revealed downregulation of CXCL10 in multiple cancer pathways. CXCL10 and related genes were enriched in pathways related to adaptive immune response, cellular defense response and regulation of innate immune response. Conclusion: The tumor microenvironment plays a critical role in development of PTC and CXCL10 may serve as a novel target of precision therapy for this patient population. Portland Press Ltd. 2021-01-07 /pmc/articles/PMC7791606/ /pubmed/33345267 http://dx.doi.org/10.1042/BSR20203459 Text en © 2021 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Bioinformatics
Qin, Xiao-Jing
Lin, Xu
Xue, Gang
Fan, Hui-Li
Wang, Hao-Yu
Wu, Jing-Fang
Pei, Da
CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer
title CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer
title_full CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer
title_fullStr CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer
title_full_unstemmed CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer
title_short CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer
title_sort cxcl10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7791606/
https://www.ncbi.nlm.nih.gov/pubmed/33345267
http://dx.doi.org/10.1042/BSR20203459
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