Cargando…

Lack of Cooperativity in the Triangular X(3) Halogen-Bonded Synthon?

[Image: see text] We have investigated 44 crystal structures, found in the Cambridge Structural Database, containing the X(3) synthon (where X = Cl, Br, I) in order to verify whether three type II halogen–halogen contacts forming the synthon exhibit cooperativity. A hypothesis that this triangular h...

Descripción completa

Detalles Bibliográficos
Autores principales: Dominikowska, Justyna, Rybarczyk-Pirek, Agnieszka J., Fonseca Guerra, Célia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7792510/
https://www.ncbi.nlm.nih.gov/pubmed/33442333
http://dx.doi.org/10.1021/acs.cgd.0c01410
_version_ 1783633821410787328
author Dominikowska, Justyna
Rybarczyk-Pirek, Agnieszka J.
Fonseca Guerra, Célia
author_facet Dominikowska, Justyna
Rybarczyk-Pirek, Agnieszka J.
Fonseca Guerra, Célia
author_sort Dominikowska, Justyna
collection PubMed
description [Image: see text] We have investigated 44 crystal structures, found in the Cambridge Structural Database, containing the X(3) synthon (where X = Cl, Br, I) in order to verify whether three type II halogen–halogen contacts forming the synthon exhibit cooperativity. A hypothesis that this triangular halogen–bonded motif is stabilized by cooperative effects is postulated on the basis of structural data. However, theoretical investigations of simplified model systems in which the X(3) motif is present demonstrate that weak synergy occurs only in the case of the I(3) motif. In the present paper we computationally investigate crystal structures in which the X(3) synthon is present, including halomesitylene structures, that are usually described as being additionally stabilized by a synergic interaction. Our computations find no cooperativity for halomesitylene trimers containing the X(3) motif. Only in the case of two other structures containing the I(3) synthon a very weak or weak synergy, i.e. the cooperative effect being stronger than −0.40 kcal mol(–1), is found. The crystal structure of iodoform has the most pronounced cooperativity of all investigated systems, amounting to about 10% of the total interaction energy.
format Online
Article
Text
id pubmed-7792510
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-77925102021-01-11 Lack of Cooperativity in the Triangular X(3) Halogen-Bonded Synthon? Dominikowska, Justyna Rybarczyk-Pirek, Agnieszka J. Fonseca Guerra, Célia Cryst Growth Des [Image: see text] We have investigated 44 crystal structures, found in the Cambridge Structural Database, containing the X(3) synthon (where X = Cl, Br, I) in order to verify whether three type II halogen–halogen contacts forming the synthon exhibit cooperativity. A hypothesis that this triangular halogen–bonded motif is stabilized by cooperative effects is postulated on the basis of structural data. However, theoretical investigations of simplified model systems in which the X(3) motif is present demonstrate that weak synergy occurs only in the case of the I(3) motif. In the present paper we computationally investigate crystal structures in which the X(3) synthon is present, including halomesitylene structures, that are usually described as being additionally stabilized by a synergic interaction. Our computations find no cooperativity for halomesitylene trimers containing the X(3) motif. Only in the case of two other structures containing the I(3) synthon a very weak or weak synergy, i.e. the cooperative effect being stronger than −0.40 kcal mol(–1), is found. The crystal structure of iodoform has the most pronounced cooperativity of all investigated systems, amounting to about 10% of the total interaction energy. American Chemical Society 2020-12-16 2021-01-06 /pmc/articles/PMC7792510/ /pubmed/33442333 http://dx.doi.org/10.1021/acs.cgd.0c01410 Text en © 2020 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited.
spellingShingle Dominikowska, Justyna
Rybarczyk-Pirek, Agnieszka J.
Fonseca Guerra, Célia
Lack of Cooperativity in the Triangular X(3) Halogen-Bonded Synthon?
title Lack of Cooperativity in the Triangular X(3) Halogen-Bonded Synthon?
title_full Lack of Cooperativity in the Triangular X(3) Halogen-Bonded Synthon?
title_fullStr Lack of Cooperativity in the Triangular X(3) Halogen-Bonded Synthon?
title_full_unstemmed Lack of Cooperativity in the Triangular X(3) Halogen-Bonded Synthon?
title_short Lack of Cooperativity in the Triangular X(3) Halogen-Bonded Synthon?
title_sort lack of cooperativity in the triangular x(3) halogen-bonded synthon?
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7792510/
https://www.ncbi.nlm.nih.gov/pubmed/33442333
http://dx.doi.org/10.1021/acs.cgd.0c01410
work_keys_str_mv AT dominikowskajustyna lackofcooperativityinthetriangularx3halogenbondedsynthon
AT rybarczykpirekagnieszkaj lackofcooperativityinthetriangularx3halogenbondedsynthon
AT fonsecaguerracelia lackofcooperativityinthetriangularx3halogenbondedsynthon