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HGFDB: a collective database of helmeted guinea fowl genomics

As a vigorous and hardy and an almost disease-free game bird, the domestic helmeted guinea fowl (Numida meleagris, hereafter HGF) has attracted considerable attention in a large number of genetic study projects. However, none of the current/recent avian databases are related to this agriculturally a...

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Autores principales: Li, Xuzhen, Li, Zhi, Shen, Quankuan, Pan, Yunbin, Dong, Xiao, Xu, Zetan, Duan, Shengchang, Li, Yunfei, Du, Yuan, Chen, Shanshan, Ma, Zhaocheng, Dong, Yang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7792568/
https://www.ncbi.nlm.nih.gov/pubmed/33417691
http://dx.doi.org/10.1093/database/baaa116
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author Li, Xuzhen
Li, Zhi
Shen, Quankuan
Pan, Yunbin
Dong, Xiao
Xu, Zetan
Duan, Shengchang
Li, Yunfei
Du, Yuan
Chen, Shanshan
Ma, Zhaocheng
Dong, Yang
author_facet Li, Xuzhen
Li, Zhi
Shen, Quankuan
Pan, Yunbin
Dong, Xiao
Xu, Zetan
Duan, Shengchang
Li, Yunfei
Du, Yuan
Chen, Shanshan
Ma, Zhaocheng
Dong, Yang
author_sort Li, Xuzhen
collection PubMed
description As a vigorous and hardy and an almost disease-free game bird, the domestic helmeted guinea fowl (Numida meleagris, hereafter HGF) has attracted considerable attention in a large number of genetic study projects. However, none of the current/recent avian databases are related to this agriculturally and commercially important poultry species. To address this data gap, we developed Helmeted Guinea Fowl Database (HGFDB), which manages and shares HGF genomic and genetic data. By processing the data of genome assembly, sequencing reads and genetic variations, we organized them into eight modules, which correspond to ‘Home’, ‘Genome’, ‘Re-sequence’, ‘Gene’, ‘Variation’, ‘Download’, ‘Tools’ and ‘Help’, HGFDB provides the most comprehensive view of the HGF genome to date and will be relevant for future studies on HGF structural and functional genomics and genetic improvement. Database URL: http://hgfdb.ynau.edu.cn/
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spelling pubmed-77925682021-01-12 HGFDB: a collective database of helmeted guinea fowl genomics Li, Xuzhen Li, Zhi Shen, Quankuan Pan, Yunbin Dong, Xiao Xu, Zetan Duan, Shengchang Li, Yunfei Du, Yuan Chen, Shanshan Ma, Zhaocheng Dong, Yang Database (Oxford) Original Article As a vigorous and hardy and an almost disease-free game bird, the domestic helmeted guinea fowl (Numida meleagris, hereafter HGF) has attracted considerable attention in a large number of genetic study projects. However, none of the current/recent avian databases are related to this agriculturally and commercially important poultry species. To address this data gap, we developed Helmeted Guinea Fowl Database (HGFDB), which manages and shares HGF genomic and genetic data. By processing the data of genome assembly, sequencing reads and genetic variations, we organized them into eight modules, which correspond to ‘Home’, ‘Genome’, ‘Re-sequence’, ‘Gene’, ‘Variation’, ‘Download’, ‘Tools’ and ‘Help’, HGFDB provides the most comprehensive view of the HGF genome to date and will be relevant for future studies on HGF structural and functional genomics and genetic improvement. Database URL: http://hgfdb.ynau.edu.cn/ Oxford University Press 2021-01-08 /pmc/articles/PMC7792568/ /pubmed/33417691 http://dx.doi.org/10.1093/database/baaa116 Text en © The Author(s) 2021. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Li, Xuzhen
Li, Zhi
Shen, Quankuan
Pan, Yunbin
Dong, Xiao
Xu, Zetan
Duan, Shengchang
Li, Yunfei
Du, Yuan
Chen, Shanshan
Ma, Zhaocheng
Dong, Yang
HGFDB: a collective database of helmeted guinea fowl genomics
title HGFDB: a collective database of helmeted guinea fowl genomics
title_full HGFDB: a collective database of helmeted guinea fowl genomics
title_fullStr HGFDB: a collective database of helmeted guinea fowl genomics
title_full_unstemmed HGFDB: a collective database of helmeted guinea fowl genomics
title_short HGFDB: a collective database of helmeted guinea fowl genomics
title_sort hgfdb: a collective database of helmeted guinea fowl genomics
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7792568/
https://www.ncbi.nlm.nih.gov/pubmed/33417691
http://dx.doi.org/10.1093/database/baaa116
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