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Complex imaging of phase domains by deep neural networks

The reconstruction of a single-particle image from the modulus of its Fourier transform, by phase-retrieval methods, has been extensively applied in X-ray structural science. Particularly for strong-phase objects, such as the phase domains found inside crystals by Bragg coherent diffraction imaging...

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Autores principales: Wu, Longlong, Juhas, Pavol, Yoo, Shinjae, Robinson, Ian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7792998/
https://www.ncbi.nlm.nih.gov/pubmed/33520239
http://dx.doi.org/10.1107/S2052252520013780
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author Wu, Longlong
Juhas, Pavol
Yoo, Shinjae
Robinson, Ian
author_facet Wu, Longlong
Juhas, Pavol
Yoo, Shinjae
Robinson, Ian
author_sort Wu, Longlong
collection PubMed
description The reconstruction of a single-particle image from the modulus of its Fourier transform, by phase-retrieval methods, has been extensively applied in X-ray structural science. Particularly for strong-phase objects, such as the phase domains found inside crystals by Bragg coherent diffraction imaging (BCDI), conventional iteration methods are time consuming and sensitive to their initial guess because of their iterative nature. Here, a deep-neural-network model is presented which gives a fast and accurate estimate of the complex single-particle image in the form of a universal approximator learned from synthetic data. A way to combine the deep-neural-network model with conventional iterative methods is then presented to refine the accuracy of the reconstructed results from the proposed deep-neural-network model. Improved convergence is also demonstrated with experimental BCDI data.
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spelling pubmed-77929982021-01-29 Complex imaging of phase domains by deep neural networks Wu, Longlong Juhas, Pavol Yoo, Shinjae Robinson, Ian IUCrJ Research Papers The reconstruction of a single-particle image from the modulus of its Fourier transform, by phase-retrieval methods, has been extensively applied in X-ray structural science. Particularly for strong-phase objects, such as the phase domains found inside crystals by Bragg coherent diffraction imaging (BCDI), conventional iteration methods are time consuming and sensitive to their initial guess because of their iterative nature. Here, a deep-neural-network model is presented which gives a fast and accurate estimate of the complex single-particle image in the form of a universal approximator learned from synthetic data. A way to combine the deep-neural-network model with conventional iterative methods is then presented to refine the accuracy of the reconstructed results from the proposed deep-neural-network model. Improved convergence is also demonstrated with experimental BCDI data. International Union of Crystallography 2021-01-01 /pmc/articles/PMC7792998/ /pubmed/33520239 http://dx.doi.org/10.1107/S2052252520013780 Text en © Wu et al. 2021 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Research Papers
Wu, Longlong
Juhas, Pavol
Yoo, Shinjae
Robinson, Ian
Complex imaging of phase domains by deep neural networks
title Complex imaging of phase domains by deep neural networks
title_full Complex imaging of phase domains by deep neural networks
title_fullStr Complex imaging of phase domains by deep neural networks
title_full_unstemmed Complex imaging of phase domains by deep neural networks
title_short Complex imaging of phase domains by deep neural networks
title_sort complex imaging of phase domains by deep neural networks
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7792998/
https://www.ncbi.nlm.nih.gov/pubmed/33520239
http://dx.doi.org/10.1107/S2052252520013780
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