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Complex imaging of phase domains by deep neural networks
The reconstruction of a single-particle image from the modulus of its Fourier transform, by phase-retrieval methods, has been extensively applied in X-ray structural science. Particularly for strong-phase objects, such as the phase domains found inside crystals by Bragg coherent diffraction imaging...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7792998/ https://www.ncbi.nlm.nih.gov/pubmed/33520239 http://dx.doi.org/10.1107/S2052252520013780 |
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author | Wu, Longlong Juhas, Pavol Yoo, Shinjae Robinson, Ian |
author_facet | Wu, Longlong Juhas, Pavol Yoo, Shinjae Robinson, Ian |
author_sort | Wu, Longlong |
collection | PubMed |
description | The reconstruction of a single-particle image from the modulus of its Fourier transform, by phase-retrieval methods, has been extensively applied in X-ray structural science. Particularly for strong-phase objects, such as the phase domains found inside crystals by Bragg coherent diffraction imaging (BCDI), conventional iteration methods are time consuming and sensitive to their initial guess because of their iterative nature. Here, a deep-neural-network model is presented which gives a fast and accurate estimate of the complex single-particle image in the form of a universal approximator learned from synthetic data. A way to combine the deep-neural-network model with conventional iterative methods is then presented to refine the accuracy of the reconstructed results from the proposed deep-neural-network model. Improved convergence is also demonstrated with experimental BCDI data. |
format | Online Article Text |
id | pubmed-7792998 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-77929982021-01-29 Complex imaging of phase domains by deep neural networks Wu, Longlong Juhas, Pavol Yoo, Shinjae Robinson, Ian IUCrJ Research Papers The reconstruction of a single-particle image from the modulus of its Fourier transform, by phase-retrieval methods, has been extensively applied in X-ray structural science. Particularly for strong-phase objects, such as the phase domains found inside crystals by Bragg coherent diffraction imaging (BCDI), conventional iteration methods are time consuming and sensitive to their initial guess because of their iterative nature. Here, a deep-neural-network model is presented which gives a fast and accurate estimate of the complex single-particle image in the form of a universal approximator learned from synthetic data. A way to combine the deep-neural-network model with conventional iterative methods is then presented to refine the accuracy of the reconstructed results from the proposed deep-neural-network model. Improved convergence is also demonstrated with experimental BCDI data. International Union of Crystallography 2021-01-01 /pmc/articles/PMC7792998/ /pubmed/33520239 http://dx.doi.org/10.1107/S2052252520013780 Text en © Wu et al. 2021 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Wu, Longlong Juhas, Pavol Yoo, Shinjae Robinson, Ian Complex imaging of phase domains by deep neural networks |
title | Complex imaging of phase domains by deep neural networks |
title_full | Complex imaging of phase domains by deep neural networks |
title_fullStr | Complex imaging of phase domains by deep neural networks |
title_full_unstemmed | Complex imaging of phase domains by deep neural networks |
title_short | Complex imaging of phase domains by deep neural networks |
title_sort | complex imaging of phase domains by deep neural networks |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7792998/ https://www.ncbi.nlm.nih.gov/pubmed/33520239 http://dx.doi.org/10.1107/S2052252520013780 |
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