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Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction
Kaatialaite mineral Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic forms white aggregates of needle-shaped crystals with micrometric size. Its structure at ambient temperature has already been reported but hydrogen atoms could not be identified from single-crystal X-ray diffraction. An analys...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7793002/ https://www.ncbi.nlm.nih.gov/pubmed/33520247 http://dx.doi.org/10.1107/S2052252520015626 |
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author | Steciuk, Gwladys Majzlan, Juraj Plášil, Jakub |
author_facet | Steciuk, Gwladys Majzlan, Juraj Plášil, Jakub |
author_sort | Steciuk, Gwladys |
collection | PubMed |
description | Kaatialaite mineral Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic forms white aggregates of needle-shaped crystals with micrometric size. Its structure at ambient temperature has already been reported but hydrogen atoms could not be identified from single-crystal X-ray diffraction. An analysis using 3D electron diffraction at low temperature brings to light the hydrogen positions and the existence of hydrogen disorder. At 100 K, kaatialaite is described in a monoclinic unit cell of a = 15.46, b = 19.996, c = 4.808 Å, β = 91.64° and V = 1485.64 Å(3) with space group P2(1)/n. The hydrogen sites were revealed after refinements both considering the dynamical effects and ignoring them. The possibility to access most of the hydrogen positions, including partially occupied ones among heavy atoms, from the kinematical refinement is due to the recent developments in the analysis of 3D electron data. The hydrogen bonding observed in kaatialaite provides examples of H(2)O configurations that have not been observed before in the structures of oxysalts with the presence of unusual inverse transformer H(2)O groups. |
format | Online Article Text |
id | pubmed-7793002 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-77930022021-01-29 Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction Steciuk, Gwladys Majzlan, Juraj Plášil, Jakub IUCrJ Research Papers Kaatialaite mineral Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic forms white aggregates of needle-shaped crystals with micrometric size. Its structure at ambient temperature has already been reported but hydrogen atoms could not be identified from single-crystal X-ray diffraction. An analysis using 3D electron diffraction at low temperature brings to light the hydrogen positions and the existence of hydrogen disorder. At 100 K, kaatialaite is described in a monoclinic unit cell of a = 15.46, b = 19.996, c = 4.808 Å, β = 91.64° and V = 1485.64 Å(3) with space group P2(1)/n. The hydrogen sites were revealed after refinements both considering the dynamical effects and ignoring them. The possibility to access most of the hydrogen positions, including partially occupied ones among heavy atoms, from the kinematical refinement is due to the recent developments in the analysis of 3D electron data. The hydrogen bonding observed in kaatialaite provides examples of H(2)O configurations that have not been observed before in the structures of oxysalts with the presence of unusual inverse transformer H(2)O groups. International Union of Crystallography 2021-01-01 /pmc/articles/PMC7793002/ /pubmed/33520247 http://dx.doi.org/10.1107/S2052252520015626 Text en © Steciuk et al. 2021 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Steciuk, Gwladys Majzlan, Juraj Plášil, Jakub Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction |
title | Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction |
title_full | Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction |
title_fullStr | Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction |
title_full_unstemmed | Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction |
title_short | Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction |
title_sort | hydrogen disorder in kaatialaite fe[aso(2)(oh)(2)]5h(2)o from jáchymov, czech republic: determination from low-temperature 3d electron diffraction |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7793002/ https://www.ncbi.nlm.nih.gov/pubmed/33520247 http://dx.doi.org/10.1107/S2052252520015626 |
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