Cargando…

Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction

Kaatialaite mineral Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic forms white aggregates of needle-shaped crystals with micrometric size. Its structure at ambient temperature has already been reported but hydrogen atoms could not be identified from single-crystal X-ray diffraction. An analys...

Descripción completa

Detalles Bibliográficos
Autores principales: Steciuk, Gwladys, Majzlan, Juraj, Plášil, Jakub
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7793002/
https://www.ncbi.nlm.nih.gov/pubmed/33520247
http://dx.doi.org/10.1107/S2052252520015626
_version_ 1783633899748851712
author Steciuk, Gwladys
Majzlan, Juraj
Plášil, Jakub
author_facet Steciuk, Gwladys
Majzlan, Juraj
Plášil, Jakub
author_sort Steciuk, Gwladys
collection PubMed
description Kaatialaite mineral Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic forms white aggregates of needle-shaped crystals with micrometric size. Its structure at ambient temperature has already been reported but hydrogen atoms could not be identified from single-crystal X-ray diffraction. An analysis using 3D electron diffraction at low temperature brings to light the hydrogen positions and the existence of hydrogen disorder. At 100 K, kaatialaite is described in a monoclinic unit cell of a = 15.46, b = 19.996, c = 4.808 Å, β = 91.64° and V = 1485.64 Å(3) with space group P2(1)/n. The hydrogen sites were revealed after refinements both considering the dynamical effects and ignoring them. The possibility to access most of the hydrogen positions, including partially occupied ones among heavy atoms, from the kinematical refinement is due to the recent developments in the analysis of 3D electron data. The hydrogen bonding observed in kaatialaite provides examples of H(2)O configurations that have not been observed before in the structures of oxysalts with the presence of unusual inverse transformer H(2)O groups.
format Online
Article
Text
id pubmed-7793002
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-77930022021-01-29 Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction Steciuk, Gwladys Majzlan, Juraj Plášil, Jakub IUCrJ Research Papers Kaatialaite mineral Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic forms white aggregates of needle-shaped crystals with micrometric size. Its structure at ambient temperature has already been reported but hydrogen atoms could not be identified from single-crystal X-ray diffraction. An analysis using 3D electron diffraction at low temperature brings to light the hydrogen positions and the existence of hydrogen disorder. At 100 K, kaatialaite is described in a monoclinic unit cell of a = 15.46, b = 19.996, c = 4.808 Å, β = 91.64° and V = 1485.64 Å(3) with space group P2(1)/n. The hydrogen sites were revealed after refinements both considering the dynamical effects and ignoring them. The possibility to access most of the hydrogen positions, including partially occupied ones among heavy atoms, from the kinematical refinement is due to the recent developments in the analysis of 3D electron data. The hydrogen bonding observed in kaatialaite provides examples of H(2)O configurations that have not been observed before in the structures of oxysalts with the presence of unusual inverse transformer H(2)O groups. International Union of Crystallography 2021-01-01 /pmc/articles/PMC7793002/ /pubmed/33520247 http://dx.doi.org/10.1107/S2052252520015626 Text en © Steciuk et al. 2021 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Research Papers
Steciuk, Gwladys
Majzlan, Juraj
Plášil, Jakub
Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction
title Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction
title_full Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction
title_fullStr Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction
title_full_unstemmed Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction
title_short Hydrogen disorder in kaatialaite Fe[AsO(2)(OH)(2)]5H(2)O from Jáchymov, Czech Republic: determination from low-temperature 3D electron diffraction
title_sort hydrogen disorder in kaatialaite fe[aso(2)(oh)(2)]5h(2)o from jáchymov, czech republic: determination from low-temperature 3d electron diffraction
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7793002/
https://www.ncbi.nlm.nih.gov/pubmed/33520247
http://dx.doi.org/10.1107/S2052252520015626
work_keys_str_mv AT steciukgwladys hydrogendisorderinkaatialaitefeaso2oh25h2ofromjachymovczechrepublicdeterminationfromlowtemperature3delectrondiffraction
AT majzlanjuraj hydrogendisorderinkaatialaitefeaso2oh25h2ofromjachymovczechrepublicdeterminationfromlowtemperature3delectrondiffraction
AT plasiljakub hydrogendisorderinkaatialaitefeaso2oh25h2ofromjachymovczechrepublicdeterminationfromlowtemperature3delectrondiffraction