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Prediction Correction Topic Evolution Research for Metabolic Pathways of the Gut Microbiota

The gut microbiota is composed of a large number of different bacteria, that play a key role in the construction of a metabolic signaling network. Deepening the link between metabolic pathways of the gut microbiota and human health, it seems increasingly essential to evolutionarily define the princi...

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Detalles Bibliográficos
Autores principales: Ning, Li, Lifang, Peng, Huixin, He
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7793741/
https://www.ncbi.nlm.nih.gov/pubmed/33425992
http://dx.doi.org/10.3389/fmolb.2020.600720
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author Ning, Li
Lifang, Peng
Huixin, He
author_facet Ning, Li
Lifang, Peng
Huixin, He
author_sort Ning, Li
collection PubMed
description The gut microbiota is composed of a large number of different bacteria, that play a key role in the construction of a metabolic signaling network. Deepening the link between metabolic pathways of the gut microbiota and human health, it seems increasingly essential to evolutionarily define the principal technologies applied in the field and their future trends. We use a topic analysis tool, Latent Dirichlet Allocation, to extract themes as a probabilistic distribution of latent topics from literature dataset. We also use the Prophet neural network prediction tool to predict future trend of this area of study. A total of 1,271 abstracts (from 2006 to 2020) were retrieved from MEDLINE with the query on “gut microbiota” and “metabolic pathway.” Our study found 10 topics covering current research types: dietary health, inflammation and liver cancer, fatty and diabetes, microbiota community, hepatic metabolism, metabolomics-based approach and SFCAs, allergic and immune disorders, gut dysbiosis, obesity, brain reaction, and cardiovascular disease. The analysis indicates that, with the rapid development of gut microbiota research, the metabolomics-based approach and SCFAs (topic 6) and dietary health (topic 1) have more studies being reported in the last 15 years. We also conclude from the data that, three other topics could be heavily focused in the future: metabolomics-based approach and SCFAs (topic 6), obesity (topic 8) and brain reaction and cardiovascular disease (topic 10), to unravel microbial affecting human health.
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spelling pubmed-77937412021-01-09 Prediction Correction Topic Evolution Research for Metabolic Pathways of the Gut Microbiota Ning, Li Lifang, Peng Huixin, He Front Mol Biosci Molecular Biosciences The gut microbiota is composed of a large number of different bacteria, that play a key role in the construction of a metabolic signaling network. Deepening the link between metabolic pathways of the gut microbiota and human health, it seems increasingly essential to evolutionarily define the principal technologies applied in the field and their future trends. We use a topic analysis tool, Latent Dirichlet Allocation, to extract themes as a probabilistic distribution of latent topics from literature dataset. We also use the Prophet neural network prediction tool to predict future trend of this area of study. A total of 1,271 abstracts (from 2006 to 2020) were retrieved from MEDLINE with the query on “gut microbiota” and “metabolic pathway.” Our study found 10 topics covering current research types: dietary health, inflammation and liver cancer, fatty and diabetes, microbiota community, hepatic metabolism, metabolomics-based approach and SFCAs, allergic and immune disorders, gut dysbiosis, obesity, brain reaction, and cardiovascular disease. The analysis indicates that, with the rapid development of gut microbiota research, the metabolomics-based approach and SCFAs (topic 6) and dietary health (topic 1) have more studies being reported in the last 15 years. We also conclude from the data that, three other topics could be heavily focused in the future: metabolomics-based approach and SCFAs (topic 6), obesity (topic 8) and brain reaction and cardiovascular disease (topic 10), to unravel microbial affecting human health. Frontiers Media S.A. 2020-12-15 /pmc/articles/PMC7793741/ /pubmed/33425992 http://dx.doi.org/10.3389/fmolb.2020.600720 Text en Copyright © 2020 Ning, Lifang and Huixin. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Ning, Li
Lifang, Peng
Huixin, He
Prediction Correction Topic Evolution Research for Metabolic Pathways of the Gut Microbiota
title Prediction Correction Topic Evolution Research for Metabolic Pathways of the Gut Microbiota
title_full Prediction Correction Topic Evolution Research for Metabolic Pathways of the Gut Microbiota
title_fullStr Prediction Correction Topic Evolution Research for Metabolic Pathways of the Gut Microbiota
title_full_unstemmed Prediction Correction Topic Evolution Research for Metabolic Pathways of the Gut Microbiota
title_short Prediction Correction Topic Evolution Research for Metabolic Pathways of the Gut Microbiota
title_sort prediction correction topic evolution research for metabolic pathways of the gut microbiota
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7793741/
https://www.ncbi.nlm.nih.gov/pubmed/33425992
http://dx.doi.org/10.3389/fmolb.2020.600720
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