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Reliable Comparison of Pnicogen, Chalcogen, and Halogen Bonds in Complexes of 6-OXF(2)-Fulvene (X = As, Sb, Se, Te, Be, I) With Three Electron Donors
The pnicogen, chalcogen, and halogen bonds between 6-OXF(2)-fulvene (X = As, Sb, Se, Te, Br, and I) and three nitrogen-containing bases (FCN, HCN, and NH(3)) are compared. For each nitrogen base, the halogen bond is strongest, followed by the pnicogen bond, and the chalcogen bond is weakest. For eac...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7793776/ https://www.ncbi.nlm.nih.gov/pubmed/33425859 http://dx.doi.org/10.3389/fchem.2020.608486 |
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author | Liu, Na Li, Qingzhong McDowell, Sean A. C. |
author_facet | Liu, Na Li, Qingzhong McDowell, Sean A. C. |
author_sort | Liu, Na |
collection | PubMed |
description | The pnicogen, chalcogen, and halogen bonds between 6-OXF(2)-fulvene (X = As, Sb, Se, Te, Br, and I) and three nitrogen-containing bases (FCN, HCN, and NH(3)) are compared. For each nitrogen base, the halogen bond is strongest, followed by the pnicogen bond, and the chalcogen bond is weakest. For each type of bond, the binding increases in the FCN < HCN < NH(3) pattern. Both FCN and HCN engage in a bond with comparable strengths and the interaction energies of most bonds are < −6 kcal/mol. However, the strongest base NH(3) forms a much more stable complex, particularly for the halogen bond with the interaction energy going up to −18 kcal/mol. For the same type of interaction, its strength increases as the mass of the central X atom increases. These bonds are different in strength, but all of them are dominated by the electrostatic interaction, with the polarization contribution important for the stronger interaction. The presence of these bonds changes the geometries of 6-OXF(2)-fulvene, particularly for the halogen bond formed by NH(3), where the F-X-F arrangement is almost vertical to the fulvene ring. |
format | Online Article Text |
id | pubmed-7793776 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77937762021-01-09 Reliable Comparison of Pnicogen, Chalcogen, and Halogen Bonds in Complexes of 6-OXF(2)-Fulvene (X = As, Sb, Se, Te, Be, I) With Three Electron Donors Liu, Na Li, Qingzhong McDowell, Sean A. C. Front Chem Chemistry The pnicogen, chalcogen, and halogen bonds between 6-OXF(2)-fulvene (X = As, Sb, Se, Te, Br, and I) and three nitrogen-containing bases (FCN, HCN, and NH(3)) are compared. For each nitrogen base, the halogen bond is strongest, followed by the pnicogen bond, and the chalcogen bond is weakest. For each type of bond, the binding increases in the FCN < HCN < NH(3) pattern. Both FCN and HCN engage in a bond with comparable strengths and the interaction energies of most bonds are < −6 kcal/mol. However, the strongest base NH(3) forms a much more stable complex, particularly for the halogen bond with the interaction energy going up to −18 kcal/mol. For the same type of interaction, its strength increases as the mass of the central X atom increases. These bonds are different in strength, but all of them are dominated by the electrostatic interaction, with the polarization contribution important for the stronger interaction. The presence of these bonds changes the geometries of 6-OXF(2)-fulvene, particularly for the halogen bond formed by NH(3), where the F-X-F arrangement is almost vertical to the fulvene ring. Frontiers Media S.A. 2020-12-09 /pmc/articles/PMC7793776/ /pubmed/33425859 http://dx.doi.org/10.3389/fchem.2020.608486 Text en Copyright © 2020 Liu, Li and McDowell. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Chemistry Liu, Na Li, Qingzhong McDowell, Sean A. C. Reliable Comparison of Pnicogen, Chalcogen, and Halogen Bonds in Complexes of 6-OXF(2)-Fulvene (X = As, Sb, Se, Te, Be, I) With Three Electron Donors |
title | Reliable Comparison of Pnicogen, Chalcogen, and Halogen Bonds in Complexes of 6-OXF(2)-Fulvene (X = As, Sb, Se, Te, Be, I) With Three Electron Donors |
title_full | Reliable Comparison of Pnicogen, Chalcogen, and Halogen Bonds in Complexes of 6-OXF(2)-Fulvene (X = As, Sb, Se, Te, Be, I) With Three Electron Donors |
title_fullStr | Reliable Comparison of Pnicogen, Chalcogen, and Halogen Bonds in Complexes of 6-OXF(2)-Fulvene (X = As, Sb, Se, Te, Be, I) With Three Electron Donors |
title_full_unstemmed | Reliable Comparison of Pnicogen, Chalcogen, and Halogen Bonds in Complexes of 6-OXF(2)-Fulvene (X = As, Sb, Se, Te, Be, I) With Three Electron Donors |
title_short | Reliable Comparison of Pnicogen, Chalcogen, and Halogen Bonds in Complexes of 6-OXF(2)-Fulvene (X = As, Sb, Se, Te, Be, I) With Three Electron Donors |
title_sort | reliable comparison of pnicogen, chalcogen, and halogen bonds in complexes of 6-oxf(2)-fulvene (x = as, sb, se, te, be, i) with three electron donors |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7793776/ https://www.ncbi.nlm.nih.gov/pubmed/33425859 http://dx.doi.org/10.3389/fchem.2020.608486 |
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