Cargando…

Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases

In the present study we investigate the microbial community inhabiting As Burgas geothermal spring, located in Ourense (Galicia, Spain). The approximately 23 Gbp of Illumina sequences generated for each replicate revealed a complex microbial community dominated by Bacteria in which Proteobacteria an...

Descripción completa

Detalles Bibliográficos
Autores principales: DeCastro, María-Eugenia, Doane, Michael P., Dinsdale, Elizabeth Ann, Rodríguez-Belmonte, Esther, González-Siso, María-Isabel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7794327/
https://www.ncbi.nlm.nih.gov/pubmed/33420292
http://dx.doi.org/10.1038/s41598-020-80489-6
_version_ 1783634182130368512
author DeCastro, María-Eugenia
Doane, Michael P.
Dinsdale, Elizabeth Ann
Rodríguez-Belmonte, Esther
González-Siso, María-Isabel
author_facet DeCastro, María-Eugenia
Doane, Michael P.
Dinsdale, Elizabeth Ann
Rodríguez-Belmonte, Esther
González-Siso, María-Isabel
author_sort DeCastro, María-Eugenia
collection PubMed
description In the present study we investigate the microbial community inhabiting As Burgas geothermal spring, located in Ourense (Galicia, Spain). The approximately 23 Gbp of Illumina sequences generated for each replicate revealed a complex microbial community dominated by Bacteria in which Proteobacteria and Aquificae were the two prevalent phyla. An association between the two most prevalent genera, Thermus and Hydrogenobacter, was suggested by the relationship of their metabolism. The high relative abundance of sequences involved in the Calvin–Benson cycle and the reductive TCA cycle unveils the dominance of an autotrophic population. Important pathways from the nitrogen and sulfur cycle are potentially taking place in As Burgas hot spring. In the assembled reads, two complete ORFs matching GH2 beta-galactosidases were found. To assess their functional characterization, the two ORFs were cloned and overexpressed in E. coli. The pTsbg enzyme had activity towards o-Nitrophenyl-β-d-galactopyranoside (ONPG) and p-Nitrophenyl-β-d-fucopyranoside, with high thermal stability and showing maximal activity at 85 °C and pH 6, nevertheless the enzyme failed to hydrolyze lactose. The other enzyme, Tsbg, was unable to hydrolyze even ONPG or lactose. This finding highlights the challenge of finding novel active enzymes based only on their sequence.
format Online
Article
Text
id pubmed-7794327
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-77943272021-01-11 Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases DeCastro, María-Eugenia Doane, Michael P. Dinsdale, Elizabeth Ann Rodríguez-Belmonte, Esther González-Siso, María-Isabel Sci Rep Article In the present study we investigate the microbial community inhabiting As Burgas geothermal spring, located in Ourense (Galicia, Spain). The approximately 23 Gbp of Illumina sequences generated for each replicate revealed a complex microbial community dominated by Bacteria in which Proteobacteria and Aquificae were the two prevalent phyla. An association between the two most prevalent genera, Thermus and Hydrogenobacter, was suggested by the relationship of their metabolism. The high relative abundance of sequences involved in the Calvin–Benson cycle and the reductive TCA cycle unveils the dominance of an autotrophic population. Important pathways from the nitrogen and sulfur cycle are potentially taking place in As Burgas hot spring. In the assembled reads, two complete ORFs matching GH2 beta-galactosidases were found. To assess their functional characterization, the two ORFs were cloned and overexpressed in E. coli. The pTsbg enzyme had activity towards o-Nitrophenyl-β-d-galactopyranoside (ONPG) and p-Nitrophenyl-β-d-fucopyranoside, with high thermal stability and showing maximal activity at 85 °C and pH 6, nevertheless the enzyme failed to hydrolyze lactose. The other enzyme, Tsbg, was unable to hydrolyze even ONPG or lactose. This finding highlights the challenge of finding novel active enzymes based only on their sequence. Nature Publishing Group UK 2021-01-08 /pmc/articles/PMC7794327/ /pubmed/33420292 http://dx.doi.org/10.1038/s41598-020-80489-6 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
DeCastro, María-Eugenia
Doane, Michael P.
Dinsdale, Elizabeth Ann
Rodríguez-Belmonte, Esther
González-Siso, María-Isabel
Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases
title Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases
title_full Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases
title_fullStr Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases
title_full_unstemmed Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases
title_short Exploring the taxonomical and functional profile of As Burgas hot spring focusing on thermostable β-galactosidases
title_sort exploring the taxonomical and functional profile of as burgas hot spring focusing on thermostable β-galactosidases
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7794327/
https://www.ncbi.nlm.nih.gov/pubmed/33420292
http://dx.doi.org/10.1038/s41598-020-80489-6
work_keys_str_mv AT decastromariaeugenia exploringthetaxonomicalandfunctionalprofileofasburgashotspringfocusingonthermostablebgalactosidases
AT doanemichaelp exploringthetaxonomicalandfunctionalprofileofasburgashotspringfocusingonthermostablebgalactosidases
AT dinsdaleelizabethann exploringthetaxonomicalandfunctionalprofileofasburgashotspringfocusingonthermostablebgalactosidases
AT rodriguezbelmonteesther exploringthetaxonomicalandfunctionalprofileofasburgashotspringfocusingonthermostablebgalactosidases
AT gonzalezsisomariaisabel exploringthetaxonomicalandfunctionalprofileofasburgashotspringfocusingonthermostablebgalactosidases