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Robust Species Distribution Mapping of Crop Mixtures Using Color Images and Convolutional Neural Networks

Crop mixtures are often beneficial in crop rotations to enhance resource utilization and yield stability. While targeted management, dependent on the local species composition, has the potential to increase the crop value, it comes at a higher expense in terms of field surveys. As fine-grained speci...

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Autores principales: Skovsen, Søren Kelstrup, Laursen, Morten Stigaard, Kristensen, Rebekka Kjeldgaard, Rasmussen, Jim, Dyrmann, Mads, Eriksen, Jørgen, Gislum, René, Jørgensen, Rasmus Nyholm, Karstoft, Henrik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7794678/
https://www.ncbi.nlm.nih.gov/pubmed/33383904
http://dx.doi.org/10.3390/s21010175
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author Skovsen, Søren Kelstrup
Laursen, Morten Stigaard
Kristensen, Rebekka Kjeldgaard
Rasmussen, Jim
Dyrmann, Mads
Eriksen, Jørgen
Gislum, René
Jørgensen, Rasmus Nyholm
Karstoft, Henrik
author_facet Skovsen, Søren Kelstrup
Laursen, Morten Stigaard
Kristensen, Rebekka Kjeldgaard
Rasmussen, Jim
Dyrmann, Mads
Eriksen, Jørgen
Gislum, René
Jørgensen, Rasmus Nyholm
Karstoft, Henrik
author_sort Skovsen, Søren Kelstrup
collection PubMed
description Crop mixtures are often beneficial in crop rotations to enhance resource utilization and yield stability. While targeted management, dependent on the local species composition, has the potential to increase the crop value, it comes at a higher expense in terms of field surveys. As fine-grained species distribution mapping of within-field variation is typically unfeasible, the potential of targeted management remains an open research area. In this work, we propose a new method for determining the biomass species composition from high resolution color images using a DeepLabv3+ based convolutional neural network. Data collection has been performed at four separate experimental plot trial sites over three growing seasons. The method is thoroughly evaluated by predicting the biomass composition of different grass clover mixtures using only an image of the canopy. With a relative biomass clover content prediction of R(2) = 0.91, we present new state-of-the-art results across the largely varying sites. Combining the algorithm with an all terrain vehicle (ATV)-mounted image acquisition system, we demonstrate a feasible method for robust coverage and species distribution mapping of 225 ha of mixed crops at a median capacity of 17 ha per hour at 173 images per hectare.
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spelling pubmed-77946782021-01-10 Robust Species Distribution Mapping of Crop Mixtures Using Color Images and Convolutional Neural Networks Skovsen, Søren Kelstrup Laursen, Morten Stigaard Kristensen, Rebekka Kjeldgaard Rasmussen, Jim Dyrmann, Mads Eriksen, Jørgen Gislum, René Jørgensen, Rasmus Nyholm Karstoft, Henrik Sensors (Basel) Article Crop mixtures are often beneficial in crop rotations to enhance resource utilization and yield stability. While targeted management, dependent on the local species composition, has the potential to increase the crop value, it comes at a higher expense in terms of field surveys. As fine-grained species distribution mapping of within-field variation is typically unfeasible, the potential of targeted management remains an open research area. In this work, we propose a new method for determining the biomass species composition from high resolution color images using a DeepLabv3+ based convolutional neural network. Data collection has been performed at four separate experimental plot trial sites over three growing seasons. The method is thoroughly evaluated by predicting the biomass composition of different grass clover mixtures using only an image of the canopy. With a relative biomass clover content prediction of R(2) = 0.91, we present new state-of-the-art results across the largely varying sites. Combining the algorithm with an all terrain vehicle (ATV)-mounted image acquisition system, we demonstrate a feasible method for robust coverage and species distribution mapping of 225 ha of mixed crops at a median capacity of 17 ha per hour at 173 images per hectare. MDPI 2020-12-29 /pmc/articles/PMC7794678/ /pubmed/33383904 http://dx.doi.org/10.3390/s21010175 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Skovsen, Søren Kelstrup
Laursen, Morten Stigaard
Kristensen, Rebekka Kjeldgaard
Rasmussen, Jim
Dyrmann, Mads
Eriksen, Jørgen
Gislum, René
Jørgensen, Rasmus Nyholm
Karstoft, Henrik
Robust Species Distribution Mapping of Crop Mixtures Using Color Images and Convolutional Neural Networks
title Robust Species Distribution Mapping of Crop Mixtures Using Color Images and Convolutional Neural Networks
title_full Robust Species Distribution Mapping of Crop Mixtures Using Color Images and Convolutional Neural Networks
title_fullStr Robust Species Distribution Mapping of Crop Mixtures Using Color Images and Convolutional Neural Networks
title_full_unstemmed Robust Species Distribution Mapping of Crop Mixtures Using Color Images and Convolutional Neural Networks
title_short Robust Species Distribution Mapping of Crop Mixtures Using Color Images and Convolutional Neural Networks
title_sort robust species distribution mapping of crop mixtures using color images and convolutional neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7794678/
https://www.ncbi.nlm.nih.gov/pubmed/33383904
http://dx.doi.org/10.3390/s21010175
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