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Machine Learning Algorithms to Classify and Quantify Multiple Behaviours in Dairy Calves Using a Sensor: Moving beyond Classification in Precision Livestock

Previous research has shown that sensors monitoring lying behaviours and feeding can detect early signs of ill health in calves. There is evidence to suggest that monitoring change in a single behaviour might not be enough for disease prediction. In calves, multiple behaviours such as locomotor play...

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Autores principales: Carslake, Charles, Vázquez-Diosdado, Jorge A., Kaler, Jasmeet
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7795166/
https://www.ncbi.nlm.nih.gov/pubmed/33375636
http://dx.doi.org/10.3390/s21010088
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author Carslake, Charles
Vázquez-Diosdado, Jorge A.
Kaler, Jasmeet
author_facet Carslake, Charles
Vázquez-Diosdado, Jorge A.
Kaler, Jasmeet
author_sort Carslake, Charles
collection PubMed
description Previous research has shown that sensors monitoring lying behaviours and feeding can detect early signs of ill health in calves. There is evidence to suggest that monitoring change in a single behaviour might not be enough for disease prediction. In calves, multiple behaviours such as locomotor play, self-grooming, feeding and activity whilst lying are likely to be informative. However, these behaviours can occur rarely in the real world, which means simply counting behaviours based on the prediction of a classifier can lead to overestimation. Here, we equipped thirteen pre-weaned dairy calves with collar-mounted sensors and monitored their behaviour with video cameras. Behavioural observations were recorded and merged with sensor signals. Features were calculated for 1–10-s windows and an AdaBoost ensemble learning algorithm implemented to classify behaviours. Finally, we developed an adjusted count quantification algorithm to predict the prevalence of locomotor play behaviour on a test dataset with low true prevalence (0.27%). Our algorithm identified locomotor play (99.73% accuracy), self-grooming (98.18% accuracy), ruminating (94.47% accuracy), non-nutritive suckling (94.96% accuracy), nutritive suckling (96.44% accuracy), active lying (90.38% accuracy) and non-active lying (90.38% accuracy). Our results detail recommended sampling frequencies, feature selection and window size. The quantification estimates of locomotor play behaviour were highly correlated with the true prevalence (0.97; p < 0.001) with a total overestimation of 18.97%. This study is the first to implement machine learning approaches for multi-class behaviour identification as well as behaviour quantification in calves. This has potential to contribute towards new insights to evaluate the health and welfare in calves by use of wearable sensors.
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spelling pubmed-77951662021-01-10 Machine Learning Algorithms to Classify and Quantify Multiple Behaviours in Dairy Calves Using a Sensor: Moving beyond Classification in Precision Livestock Carslake, Charles Vázquez-Diosdado, Jorge A. Kaler, Jasmeet Sensors (Basel) Article Previous research has shown that sensors monitoring lying behaviours and feeding can detect early signs of ill health in calves. There is evidence to suggest that monitoring change in a single behaviour might not be enough for disease prediction. In calves, multiple behaviours such as locomotor play, self-grooming, feeding and activity whilst lying are likely to be informative. However, these behaviours can occur rarely in the real world, which means simply counting behaviours based on the prediction of a classifier can lead to overestimation. Here, we equipped thirteen pre-weaned dairy calves with collar-mounted sensors and monitored their behaviour with video cameras. Behavioural observations were recorded and merged with sensor signals. Features were calculated for 1–10-s windows and an AdaBoost ensemble learning algorithm implemented to classify behaviours. Finally, we developed an adjusted count quantification algorithm to predict the prevalence of locomotor play behaviour on a test dataset with low true prevalence (0.27%). Our algorithm identified locomotor play (99.73% accuracy), self-grooming (98.18% accuracy), ruminating (94.47% accuracy), non-nutritive suckling (94.96% accuracy), nutritive suckling (96.44% accuracy), active lying (90.38% accuracy) and non-active lying (90.38% accuracy). Our results detail recommended sampling frequencies, feature selection and window size. The quantification estimates of locomotor play behaviour were highly correlated with the true prevalence (0.97; p < 0.001) with a total overestimation of 18.97%. This study is the first to implement machine learning approaches for multi-class behaviour identification as well as behaviour quantification in calves. This has potential to contribute towards new insights to evaluate the health and welfare in calves by use of wearable sensors. MDPI 2020-12-25 /pmc/articles/PMC7795166/ /pubmed/33375636 http://dx.doi.org/10.3390/s21010088 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Carslake, Charles
Vázquez-Diosdado, Jorge A.
Kaler, Jasmeet
Machine Learning Algorithms to Classify and Quantify Multiple Behaviours in Dairy Calves Using a Sensor: Moving beyond Classification in Precision Livestock
title Machine Learning Algorithms to Classify and Quantify Multiple Behaviours in Dairy Calves Using a Sensor: Moving beyond Classification in Precision Livestock
title_full Machine Learning Algorithms to Classify and Quantify Multiple Behaviours in Dairy Calves Using a Sensor: Moving beyond Classification in Precision Livestock
title_fullStr Machine Learning Algorithms to Classify and Quantify Multiple Behaviours in Dairy Calves Using a Sensor: Moving beyond Classification in Precision Livestock
title_full_unstemmed Machine Learning Algorithms to Classify and Quantify Multiple Behaviours in Dairy Calves Using a Sensor: Moving beyond Classification in Precision Livestock
title_short Machine Learning Algorithms to Classify and Quantify Multiple Behaviours in Dairy Calves Using a Sensor: Moving beyond Classification in Precision Livestock
title_sort machine learning algorithms to classify and quantify multiple behaviours in dairy calves using a sensor: moving beyond classification in precision livestock
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7795166/
https://www.ncbi.nlm.nih.gov/pubmed/33375636
http://dx.doi.org/10.3390/s21010088
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