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Ab Initio Molecular Dynamics Simulations of the Interaction between Organic Phosphates and Goethite
Today’s fertilizers rely heavily on mining phosphorus (P) rocks. These rocks are known to become exhausted in near future, and therefore effective P use is crucial to avoid food shortage. A substantial amount of P from fertilizers gets adsorbed onto soil minerals to become unavailable to plants. Und...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7795625/ https://www.ncbi.nlm.nih.gov/pubmed/33396506 http://dx.doi.org/10.3390/molecules26010160 |
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author | Ganta, Prasanth B. Kühn, Oliver Ahmed, Ashour A. |
author_facet | Ganta, Prasanth B. Kühn, Oliver Ahmed, Ashour A. |
author_sort | Ganta, Prasanth B. |
collection | PubMed |
description | Today’s fertilizers rely heavily on mining phosphorus (P) rocks. These rocks are known to become exhausted in near future, and therefore effective P use is crucial to avoid food shortage. A substantial amount of P from fertilizers gets adsorbed onto soil minerals to become unavailable to plants. Understanding P interaction with these minerals would help efforts that improve P efficiency. To this end, we performed a molecular level analysis of the interaction of common organic P compounds (glycerolphosphate (GP) and inositol hexaphosphate (IHP)) with the abundant soil mineral (goethite) in presence of water. Molecular dynamics simulations are performed for goethite–IHP/GP–water complexes using the multiscale quantum mechanics/molecular mechanics method. Results show that GP forms monodentate (M) and bidentate mononuclear (B) motifs with B being more stable than M. IHP interacts through multiple phosphate groups with the 3M motif being most stable. The order of goethite–IHP/GP interaction energies is GP M < GP B < IHP M < IHP 3M. Water is important in these interactions as multiple proton transfers occur and hydrogen bonds are formed between goethite–IHP/GP complexes and water. We also present theoretically calculated infrared spectra which match reasonably well with frequencies reported in literature. |
format | Online Article Text |
id | pubmed-7795625 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-77956252021-01-10 Ab Initio Molecular Dynamics Simulations of the Interaction between Organic Phosphates and Goethite Ganta, Prasanth B. Kühn, Oliver Ahmed, Ashour A. Molecules Article Today’s fertilizers rely heavily on mining phosphorus (P) rocks. These rocks are known to become exhausted in near future, and therefore effective P use is crucial to avoid food shortage. A substantial amount of P from fertilizers gets adsorbed onto soil minerals to become unavailable to plants. Understanding P interaction with these minerals would help efforts that improve P efficiency. To this end, we performed a molecular level analysis of the interaction of common organic P compounds (glycerolphosphate (GP) and inositol hexaphosphate (IHP)) with the abundant soil mineral (goethite) in presence of water. Molecular dynamics simulations are performed for goethite–IHP/GP–water complexes using the multiscale quantum mechanics/molecular mechanics method. Results show that GP forms monodentate (M) and bidentate mononuclear (B) motifs with B being more stable than M. IHP interacts through multiple phosphate groups with the 3M motif being most stable. The order of goethite–IHP/GP interaction energies is GP M < GP B < IHP M < IHP 3M. Water is important in these interactions as multiple proton transfers occur and hydrogen bonds are formed between goethite–IHP/GP complexes and water. We also present theoretically calculated infrared spectra which match reasonably well with frequencies reported in literature. MDPI 2020-12-31 /pmc/articles/PMC7795625/ /pubmed/33396506 http://dx.doi.org/10.3390/molecules26010160 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ganta, Prasanth B. Kühn, Oliver Ahmed, Ashour A. Ab Initio Molecular Dynamics Simulations of the Interaction between Organic Phosphates and Goethite |
title | Ab Initio Molecular Dynamics Simulations of the Interaction between Organic Phosphates and Goethite |
title_full | Ab Initio Molecular Dynamics Simulations of the Interaction between Organic Phosphates and Goethite |
title_fullStr | Ab Initio Molecular Dynamics Simulations of the Interaction between Organic Phosphates and Goethite |
title_full_unstemmed | Ab Initio Molecular Dynamics Simulations of the Interaction between Organic Phosphates and Goethite |
title_short | Ab Initio Molecular Dynamics Simulations of the Interaction between Organic Phosphates and Goethite |
title_sort | ab initio molecular dynamics simulations of the interaction between organic phosphates and goethite |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7795625/ https://www.ncbi.nlm.nih.gov/pubmed/33396506 http://dx.doi.org/10.3390/molecules26010160 |
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