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System, Method and Software for Calculation of a Cannabis Drug Efficiency Index for the Reduction of Inflammation
There are many varieties of Cannabis sativa that differ from each other by composition of cannabinoids, terpenes and other molecules. The medicinal properties of these cultivars are often very different, with some being more efficient than others. This report describes the development of a method an...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7795809/ https://www.ncbi.nlm.nih.gov/pubmed/33396562 http://dx.doi.org/10.3390/ijms22010388 |
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author | Borisov, Nicolas Ilnytskyy, Yaroslav Byeon, Boseon Kovalchuk, Olga Kovalchuk, Igor |
author_facet | Borisov, Nicolas Ilnytskyy, Yaroslav Byeon, Boseon Kovalchuk, Olga Kovalchuk, Igor |
author_sort | Borisov, Nicolas |
collection | PubMed |
description | There are many varieties of Cannabis sativa that differ from each other by composition of cannabinoids, terpenes and other molecules. The medicinal properties of these cultivars are often very different, with some being more efficient than others. This report describes the development of a method and software for the analysis of the efficiency of various cannabis extracts to detect the anti-inflammatory properties of the various cannabis extracts. The method uses high-throughput gene expression profiling data but can potentially use other omics data as well. According to the signaling pathway topology, the gene expression profiles are convoluted into the signaling pathway activities using a signaling pathway impact analysis (SPIA) method. The method was tested by inducing inflammation in human 3D epithelial tissues, including intestine, oral and skin, and then exposing these tissues to various extracts and then performing transcriptome analysis. The analysis showed a different efficiency of the various extracts in restoring the transcriptome changes to the pre-inflammation state, thus allowing to calculate a different cannabis drug efficiency index (CDEI). |
format | Online Article Text |
id | pubmed-7795809 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-77958092021-01-10 System, Method and Software for Calculation of a Cannabis Drug Efficiency Index for the Reduction of Inflammation Borisov, Nicolas Ilnytskyy, Yaroslav Byeon, Boseon Kovalchuk, Olga Kovalchuk, Igor Int J Mol Sci Article There are many varieties of Cannabis sativa that differ from each other by composition of cannabinoids, terpenes and other molecules. The medicinal properties of these cultivars are often very different, with some being more efficient than others. This report describes the development of a method and software for the analysis of the efficiency of various cannabis extracts to detect the anti-inflammatory properties of the various cannabis extracts. The method uses high-throughput gene expression profiling data but can potentially use other omics data as well. According to the signaling pathway topology, the gene expression profiles are convoluted into the signaling pathway activities using a signaling pathway impact analysis (SPIA) method. The method was tested by inducing inflammation in human 3D epithelial tissues, including intestine, oral and skin, and then exposing these tissues to various extracts and then performing transcriptome analysis. The analysis showed a different efficiency of the various extracts in restoring the transcriptome changes to the pre-inflammation state, thus allowing to calculate a different cannabis drug efficiency index (CDEI). MDPI 2020-12-31 /pmc/articles/PMC7795809/ /pubmed/33396562 http://dx.doi.org/10.3390/ijms22010388 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Borisov, Nicolas Ilnytskyy, Yaroslav Byeon, Boseon Kovalchuk, Olga Kovalchuk, Igor System, Method and Software for Calculation of a Cannabis Drug Efficiency Index for the Reduction of Inflammation |
title | System, Method and Software for Calculation of a Cannabis Drug Efficiency Index for the Reduction of Inflammation |
title_full | System, Method and Software for Calculation of a Cannabis Drug Efficiency Index for the Reduction of Inflammation |
title_fullStr | System, Method and Software for Calculation of a Cannabis Drug Efficiency Index for the Reduction of Inflammation |
title_full_unstemmed | System, Method and Software for Calculation of a Cannabis Drug Efficiency Index for the Reduction of Inflammation |
title_short | System, Method and Software for Calculation of a Cannabis Drug Efficiency Index for the Reduction of Inflammation |
title_sort | system, method and software for calculation of a cannabis drug efficiency index for the reduction of inflammation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7795809/ https://www.ncbi.nlm.nih.gov/pubmed/33396562 http://dx.doi.org/10.3390/ijms22010388 |
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