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ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation
Lung CT image segmentation is a key process in many applications such as lung cancer detection. It is considered a challenging problem due to existing similar image densities in the pulmonary structures, different types of scanners, and scanning protocols. Most of the current semi-automatic segmenta...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7796094/ https://www.ncbi.nlm.nih.gov/pubmed/33401581 http://dx.doi.org/10.3390/s21010268 |
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author | Jalali, Yeganeh Fateh, Mansoor Rezvani, Mohsen Abolghasemi, Vahid Anisi, Mohammad Hossein |
author_facet | Jalali, Yeganeh Fateh, Mansoor Rezvani, Mohsen Abolghasemi, Vahid Anisi, Mohammad Hossein |
author_sort | Jalali, Yeganeh |
collection | PubMed |
description | Lung CT image segmentation is a key process in many applications such as lung cancer detection. It is considered a challenging problem due to existing similar image densities in the pulmonary structures, different types of scanners, and scanning protocols. Most of the current semi-automatic segmentation methods rely on human factors therefore it might suffer from lack of accuracy. Another shortcoming of these methods is their high false-positive rate. In recent years, several approaches, based on a deep learning framework, have been effectively applied in medical image segmentation. Among existing deep neural networks, the U-Net has provided great success in this field. In this paper, we propose a deep neural network architecture to perform an automatic lung CT image segmentation process. In the proposed method, several extensive preprocessing techniques are applied to raw CT images. Then, ground truths corresponding to these images are extracted via some morphological operations and manual reforms. Finally, all the prepared images with the corresponding ground truth are fed into a modified U-Net in which the encoder is replaced with a pre-trained ResNet-34 network (referred to as Res BCDU-Net). In the architecture, we employ BConvLSTM (Bidirectional Convolutional Long Short-term Memory)as an advanced integrator module instead of simple traditional concatenators. This is to merge the extracted feature maps of the corresponding contracting path into the previous expansion of the up-convolutional layer. Finally, a densely connected convolutional layer is utilized for the contracting path. The results of our extensive experiments on lung CT images (LIDC-IDRI database) confirm the effectiveness of the proposed method where a dice coefficient index of 97.31% is achieved. |
format | Online Article Text |
id | pubmed-7796094 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-77960942021-01-10 ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation Jalali, Yeganeh Fateh, Mansoor Rezvani, Mohsen Abolghasemi, Vahid Anisi, Mohammad Hossein Sensors (Basel) Article Lung CT image segmentation is a key process in many applications such as lung cancer detection. It is considered a challenging problem due to existing similar image densities in the pulmonary structures, different types of scanners, and scanning protocols. Most of the current semi-automatic segmentation methods rely on human factors therefore it might suffer from lack of accuracy. Another shortcoming of these methods is their high false-positive rate. In recent years, several approaches, based on a deep learning framework, have been effectively applied in medical image segmentation. Among existing deep neural networks, the U-Net has provided great success in this field. In this paper, we propose a deep neural network architecture to perform an automatic lung CT image segmentation process. In the proposed method, several extensive preprocessing techniques are applied to raw CT images. Then, ground truths corresponding to these images are extracted via some morphological operations and manual reforms. Finally, all the prepared images with the corresponding ground truth are fed into a modified U-Net in which the encoder is replaced with a pre-trained ResNet-34 network (referred to as Res BCDU-Net). In the architecture, we employ BConvLSTM (Bidirectional Convolutional Long Short-term Memory)as an advanced integrator module instead of simple traditional concatenators. This is to merge the extracted feature maps of the corresponding contracting path into the previous expansion of the up-convolutional layer. Finally, a densely connected convolutional layer is utilized for the contracting path. The results of our extensive experiments on lung CT images (LIDC-IDRI database) confirm the effectiveness of the proposed method where a dice coefficient index of 97.31% is achieved. MDPI 2021-01-03 /pmc/articles/PMC7796094/ /pubmed/33401581 http://dx.doi.org/10.3390/s21010268 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Jalali, Yeganeh Fateh, Mansoor Rezvani, Mohsen Abolghasemi, Vahid Anisi, Mohammad Hossein ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation |
title | ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation |
title_full | ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation |
title_fullStr | ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation |
title_full_unstemmed | ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation |
title_short | ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation |
title_sort | resbcdu-net: a deep learning framework for lung ct image segmentation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7796094/ https://www.ncbi.nlm.nih.gov/pubmed/33401581 http://dx.doi.org/10.3390/s21010268 |
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