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ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation

Lung CT image segmentation is a key process in many applications such as lung cancer detection. It is considered a challenging problem due to existing similar image densities in the pulmonary structures, different types of scanners, and scanning protocols. Most of the current semi-automatic segmenta...

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Autores principales: Jalali, Yeganeh, Fateh, Mansoor, Rezvani, Mohsen, Abolghasemi, Vahid, Anisi, Mohammad Hossein
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7796094/
https://www.ncbi.nlm.nih.gov/pubmed/33401581
http://dx.doi.org/10.3390/s21010268
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author Jalali, Yeganeh
Fateh, Mansoor
Rezvani, Mohsen
Abolghasemi, Vahid
Anisi, Mohammad Hossein
author_facet Jalali, Yeganeh
Fateh, Mansoor
Rezvani, Mohsen
Abolghasemi, Vahid
Anisi, Mohammad Hossein
author_sort Jalali, Yeganeh
collection PubMed
description Lung CT image segmentation is a key process in many applications such as lung cancer detection. It is considered a challenging problem due to existing similar image densities in the pulmonary structures, different types of scanners, and scanning protocols. Most of the current semi-automatic segmentation methods rely on human factors therefore it might suffer from lack of accuracy. Another shortcoming of these methods is their high false-positive rate. In recent years, several approaches, based on a deep learning framework, have been effectively applied in medical image segmentation. Among existing deep neural networks, the U-Net has provided great success in this field. In this paper, we propose a deep neural network architecture to perform an automatic lung CT image segmentation process. In the proposed method, several extensive preprocessing techniques are applied to raw CT images. Then, ground truths corresponding to these images are extracted via some morphological operations and manual reforms. Finally, all the prepared images with the corresponding ground truth are fed into a modified U-Net in which the encoder is replaced with a pre-trained ResNet-34 network (referred to as Res BCDU-Net). In the architecture, we employ BConvLSTM (Bidirectional Convolutional Long Short-term Memory)as an advanced integrator module instead of simple traditional concatenators. This is to merge the extracted feature maps of the corresponding contracting path into the previous expansion of the up-convolutional layer. Finally, a densely connected convolutional layer is utilized for the contracting path. The results of our extensive experiments on lung CT images (LIDC-IDRI database) confirm the effectiveness of the proposed method where a dice coefficient index of 97.31% is achieved.
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spelling pubmed-77960942021-01-10 ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation Jalali, Yeganeh Fateh, Mansoor Rezvani, Mohsen Abolghasemi, Vahid Anisi, Mohammad Hossein Sensors (Basel) Article Lung CT image segmentation is a key process in many applications such as lung cancer detection. It is considered a challenging problem due to existing similar image densities in the pulmonary structures, different types of scanners, and scanning protocols. Most of the current semi-automatic segmentation methods rely on human factors therefore it might suffer from lack of accuracy. Another shortcoming of these methods is their high false-positive rate. In recent years, several approaches, based on a deep learning framework, have been effectively applied in medical image segmentation. Among existing deep neural networks, the U-Net has provided great success in this field. In this paper, we propose a deep neural network architecture to perform an automatic lung CT image segmentation process. In the proposed method, several extensive preprocessing techniques are applied to raw CT images. Then, ground truths corresponding to these images are extracted via some morphological operations and manual reforms. Finally, all the prepared images with the corresponding ground truth are fed into a modified U-Net in which the encoder is replaced with a pre-trained ResNet-34 network (referred to as Res BCDU-Net). In the architecture, we employ BConvLSTM (Bidirectional Convolutional Long Short-term Memory)as an advanced integrator module instead of simple traditional concatenators. This is to merge the extracted feature maps of the corresponding contracting path into the previous expansion of the up-convolutional layer. Finally, a densely connected convolutional layer is utilized for the contracting path. The results of our extensive experiments on lung CT images (LIDC-IDRI database) confirm the effectiveness of the proposed method where a dice coefficient index of 97.31% is achieved. MDPI 2021-01-03 /pmc/articles/PMC7796094/ /pubmed/33401581 http://dx.doi.org/10.3390/s21010268 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Jalali, Yeganeh
Fateh, Mansoor
Rezvani, Mohsen
Abolghasemi, Vahid
Anisi, Mohammad Hossein
ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation
title ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation
title_full ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation
title_fullStr ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation
title_full_unstemmed ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation
title_short ResBCDU-Net: A Deep Learning Framework for Lung CT Image Segmentation
title_sort resbcdu-net: a deep learning framework for lung ct image segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7796094/
https://www.ncbi.nlm.nih.gov/pubmed/33401581
http://dx.doi.org/10.3390/s21010268
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