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Exploration of Free Energy Surface and Thermal Effects on Relative Population and Infrared Spectrum of the Be(6)B(11)(−) Fluxional Cluster
The starting point to understanding cluster properties is the putative global minimum and all the nearby local energy minima; however, locating them is computationally expensive and difficult. The relative populations and spectroscopic properties that are a function of temperature can be approximate...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7796227/ https://www.ncbi.nlm.nih.gov/pubmed/33383889 http://dx.doi.org/10.3390/ma14010112 |
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author | Buelna-Garcia, Carlos Emiliano Cabellos, José Luis Quiroz-Castillo, Jesus Manuel Martinez-Guajardo, Gerardo Castillo-Quevedo, Cesar de-Leon-Flores, Aned Anzueto-Sanchez, Gilberto Martin-del-Campo-Solis, Martha Fabiola |
author_facet | Buelna-Garcia, Carlos Emiliano Cabellos, José Luis Quiroz-Castillo, Jesus Manuel Martinez-Guajardo, Gerardo Castillo-Quevedo, Cesar de-Leon-Flores, Aned Anzueto-Sanchez, Gilberto Martin-del-Campo-Solis, Martha Fabiola |
author_sort | Buelna-Garcia, Carlos Emiliano |
collection | PubMed |
description | The starting point to understanding cluster properties is the putative global minimum and all the nearby local energy minima; however, locating them is computationally expensive and difficult. The relative populations and spectroscopic properties that are a function of temperature can be approximately computed by employing statistical thermodynamics. Here, we investigate entropy-driven isomers distribution on Be(6)B(11)(−) clusters and the effect of temperature on their infrared spectroscopy and relative populations. We identify the vibration modes possessed by the cluster that significantly contribute to the zero-point energy. A couple of steps are considered for computing the temperature-dependent relative population: First, using a genetic algorithm coupled to density functional theory, we performed an extensive and systematic exploration of the potential/free energy surface of Be(6)B(11)(−) clusters to locate the putative global minimum and elucidate the low-energy structures. Second, the relative populations’ temperature effects are determined by considering the thermodynamic properties and Boltzmann factors. The temperature-dependent relative populations show that the entropies and temperature are essential for determining the global minimum. We compute the temperature-dependent total infrared spectra employing the Boltzmann factor weighted sums of each isomer’s infrared spectrum and find that at finite temperature, the total infrared spectrum is composed of an admixture of infrared spectra that corresponds to the spectra of the lowest-energy structure and its isomers located at higher energies. The methodology and results describe the thermal effects in the relative population and the infrared spectra. |
format | Online Article Text |
id | pubmed-7796227 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-77962272021-01-10 Exploration of Free Energy Surface and Thermal Effects on Relative Population and Infrared Spectrum of the Be(6)B(11)(−) Fluxional Cluster Buelna-Garcia, Carlos Emiliano Cabellos, José Luis Quiroz-Castillo, Jesus Manuel Martinez-Guajardo, Gerardo Castillo-Quevedo, Cesar de-Leon-Flores, Aned Anzueto-Sanchez, Gilberto Martin-del-Campo-Solis, Martha Fabiola Materials (Basel) Article The starting point to understanding cluster properties is the putative global minimum and all the nearby local energy minima; however, locating them is computationally expensive and difficult. The relative populations and spectroscopic properties that are a function of temperature can be approximately computed by employing statistical thermodynamics. Here, we investigate entropy-driven isomers distribution on Be(6)B(11)(−) clusters and the effect of temperature on their infrared spectroscopy and relative populations. We identify the vibration modes possessed by the cluster that significantly contribute to the zero-point energy. A couple of steps are considered for computing the temperature-dependent relative population: First, using a genetic algorithm coupled to density functional theory, we performed an extensive and systematic exploration of the potential/free energy surface of Be(6)B(11)(−) clusters to locate the putative global minimum and elucidate the low-energy structures. Second, the relative populations’ temperature effects are determined by considering the thermodynamic properties and Boltzmann factors. The temperature-dependent relative populations show that the entropies and temperature are essential for determining the global minimum. We compute the temperature-dependent total infrared spectra employing the Boltzmann factor weighted sums of each isomer’s infrared spectrum and find that at finite temperature, the total infrared spectrum is composed of an admixture of infrared spectra that corresponds to the spectra of the lowest-energy structure and its isomers located at higher energies. The methodology and results describe the thermal effects in the relative population and the infrared spectra. MDPI 2020-12-29 /pmc/articles/PMC7796227/ /pubmed/33383889 http://dx.doi.org/10.3390/ma14010112 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Buelna-Garcia, Carlos Emiliano Cabellos, José Luis Quiroz-Castillo, Jesus Manuel Martinez-Guajardo, Gerardo Castillo-Quevedo, Cesar de-Leon-Flores, Aned Anzueto-Sanchez, Gilberto Martin-del-Campo-Solis, Martha Fabiola Exploration of Free Energy Surface and Thermal Effects on Relative Population and Infrared Spectrum of the Be(6)B(11)(−) Fluxional Cluster |
title | Exploration of Free Energy Surface and Thermal Effects on Relative Population and Infrared Spectrum of the Be(6)B(11)(−) Fluxional Cluster |
title_full | Exploration of Free Energy Surface and Thermal Effects on Relative Population and Infrared Spectrum of the Be(6)B(11)(−) Fluxional Cluster |
title_fullStr | Exploration of Free Energy Surface and Thermal Effects on Relative Population and Infrared Spectrum of the Be(6)B(11)(−) Fluxional Cluster |
title_full_unstemmed | Exploration of Free Energy Surface and Thermal Effects on Relative Population and Infrared Spectrum of the Be(6)B(11)(−) Fluxional Cluster |
title_short | Exploration of Free Energy Surface and Thermal Effects on Relative Population and Infrared Spectrum of the Be(6)B(11)(−) Fluxional Cluster |
title_sort | exploration of free energy surface and thermal effects on relative population and infrared spectrum of the be(6)b(11)(−) fluxional cluster |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7796227/ https://www.ncbi.nlm.nih.gov/pubmed/33383889 http://dx.doi.org/10.3390/ma14010112 |
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