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QSAR Models for Human Carcinogenicity: An Assessment Based on Oral and Inhalation Slope Factors

Carcinogenicity is a crucial endpoint for the safety assessment of chemicals and products. During the last few decades, the development of quantitative structure–activity relationship ((Q)SAR) models has gained importance for regulatory use, in combination with in vitro testing or expert-based reaso...

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Autores principales: Toma, Cosimo, Manganaro, Alberto, Raitano, Giuseppa, Marzo, Marco, Gadaleta, Domenico, Baderna, Diego, Roncaglioni, Alessandra, Kramer, Nynke, Benfenati, Emilio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7796303/
https://www.ncbi.nlm.nih.gov/pubmed/33383938
http://dx.doi.org/10.3390/molecules26010127
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author Toma, Cosimo
Manganaro, Alberto
Raitano, Giuseppa
Marzo, Marco
Gadaleta, Domenico
Baderna, Diego
Roncaglioni, Alessandra
Kramer, Nynke
Benfenati, Emilio
author_facet Toma, Cosimo
Manganaro, Alberto
Raitano, Giuseppa
Marzo, Marco
Gadaleta, Domenico
Baderna, Diego
Roncaglioni, Alessandra
Kramer, Nynke
Benfenati, Emilio
author_sort Toma, Cosimo
collection PubMed
description Carcinogenicity is a crucial endpoint for the safety assessment of chemicals and products. During the last few decades, the development of quantitative structure–activity relationship ((Q)SAR) models has gained importance for regulatory use, in combination with in vitro testing or expert-based reasoning. Several classification models can now predict both human and rat carcinogenicity, but there are few models to quantitatively assess carcinogenicity in humans. To our knowledge, slope factor (SF), a parameter describing carcinogenicity potential used especially for human risk assessment of contaminated sites, has never been modeled for both inhalation and oral exposures. In this study, we developed classification and regression models for inhalation and oral SFs using data from the Risk Assessment Information System (RAIS) and different machine learning approaches. The models performed well in classification, with accuracies for the external set of 0.76 and 0.74 for oral and inhalation exposure, respectively, and r(2) values of 0.57 and 0.65 in the regression models for oral and inhalation SFs in external validation. These models might therefore support regulators in (de)prioritizing substances for regulatory action and in weighing evidence in the context of chemical safety assessments. Moreover, these models are implemented on the VEGA platform and are now freely downloadable online.
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spelling pubmed-77963032021-01-10 QSAR Models for Human Carcinogenicity: An Assessment Based on Oral and Inhalation Slope Factors Toma, Cosimo Manganaro, Alberto Raitano, Giuseppa Marzo, Marco Gadaleta, Domenico Baderna, Diego Roncaglioni, Alessandra Kramer, Nynke Benfenati, Emilio Molecules Article Carcinogenicity is a crucial endpoint for the safety assessment of chemicals and products. During the last few decades, the development of quantitative structure–activity relationship ((Q)SAR) models has gained importance for regulatory use, in combination with in vitro testing or expert-based reasoning. Several classification models can now predict both human and rat carcinogenicity, but there are few models to quantitatively assess carcinogenicity in humans. To our knowledge, slope factor (SF), a parameter describing carcinogenicity potential used especially for human risk assessment of contaminated sites, has never been modeled for both inhalation and oral exposures. In this study, we developed classification and regression models for inhalation and oral SFs using data from the Risk Assessment Information System (RAIS) and different machine learning approaches. The models performed well in classification, with accuracies for the external set of 0.76 and 0.74 for oral and inhalation exposure, respectively, and r(2) values of 0.57 and 0.65 in the regression models for oral and inhalation SFs in external validation. These models might therefore support regulators in (de)prioritizing substances for regulatory action and in weighing evidence in the context of chemical safety assessments. Moreover, these models are implemented on the VEGA platform and are now freely downloadable online. MDPI 2020-12-29 /pmc/articles/PMC7796303/ /pubmed/33383938 http://dx.doi.org/10.3390/molecules26010127 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Toma, Cosimo
Manganaro, Alberto
Raitano, Giuseppa
Marzo, Marco
Gadaleta, Domenico
Baderna, Diego
Roncaglioni, Alessandra
Kramer, Nynke
Benfenati, Emilio
QSAR Models for Human Carcinogenicity: An Assessment Based on Oral and Inhalation Slope Factors
title QSAR Models for Human Carcinogenicity: An Assessment Based on Oral and Inhalation Slope Factors
title_full QSAR Models for Human Carcinogenicity: An Assessment Based on Oral and Inhalation Slope Factors
title_fullStr QSAR Models for Human Carcinogenicity: An Assessment Based on Oral and Inhalation Slope Factors
title_full_unstemmed QSAR Models for Human Carcinogenicity: An Assessment Based on Oral and Inhalation Slope Factors
title_short QSAR Models for Human Carcinogenicity: An Assessment Based on Oral and Inhalation Slope Factors
title_sort qsar models for human carcinogenicity: an assessment based on oral and inhalation slope factors
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7796303/
https://www.ncbi.nlm.nih.gov/pubmed/33383938
http://dx.doi.org/10.3390/molecules26010127
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