Cargando…

Systematic evaluation of the effects of genetic variants on PIWI-interacting RNA expression across 33 cancer types

PIWI-interacting RNAs (piRNAs) are an emerging class of non-coding RNAs involved in tumorigenesis. Expression quantitative trait locus (eQTL) analysis has been demonstrated to help reveal the genetic mechanism of single nucleotide polymorphisms (SNPs) in cancer etiology. However, there are no databa...

Descripción completa

Detalles Bibliográficos
Autores principales:	Xin, Junyi, Du, Mulong, Jiang, Xia, Wu, Yanling, Ben, Shuai, Zheng, Rui, Chu, Haiyan, Li, Shuwei, Zhang, Zhengdong, Wang, Meilin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2020
Materias:	Data Resources and Analyses
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7797066/ https://www.ncbi.nlm.nih.gov/pubmed/33330918 http://dx.doi.org/10.1093/nar/gkaa1190

Ejemplares similares

The biogenesis and biological function of PIWI-interacting RNA in cancer
por: Chen, Silu, et al.
Publicado: (2021)

Accumulation of histone variant H3.3 with age is associated with profound changes in the histone methylation landscape
por: Tvardovskiy, Andrey, et al.
Publicado: (2017)

ImmReg: the regulon atlas of immune-related pathways across cancer types
por: Jiang, Tiantongfei, et al.
Publicado: (2021)

Polympact: exploring functional relations among common human genetic variants
por: Valentini, Samuel, et al.
Publicado: (2022)

Unique transposon landscapes are pervasive across Drosophila melanogaster genomes
por: Rahman, Reazur, et al.
Publicado: (2015)

Landscape of semi-extractable RNAs across five human cell lines
por: Zeng, Chao, et al.
Publicado: (2023)

CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids
por: Pinilla-Redondo, Rafael, et al.
Publicado: (2021)

Reconstructing the landscape of gut microbial species across 29,000 diverse individuals
por: Segota, Igor, et al.
Publicado: (2023)

The landscape of long noncoding RNA-involved and tumor-specific fusions across various cancers
por: Guo, Mengbiao, et al.
Publicado: (2020)

LncMAP: Pan-cancer atlas of long noncoding RNA-mediated transcriptional network perturbations
por: Li, Yongsheng, et al.
Publicado: (2018)

Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues
por: Reyes, Alejandro, et al.
Publicado: (2018)

Prevalence and architecture of posttranscriptionally impaired synonymous mutations in 8,320 genomes across 22 cancer types
por: Teng, Huajing, et al.
Publicado: (2020)

Quantitative global studies reveal differential translational control by start codon context across the fungal kingdom
por: Wallace, Edward W J, et al.
Publicado: (2020)

In silico prediction of splice-altering single nucleotide variants in the human genome
por: Jian, Xueqiu, et al.
Publicado: (2014)

Comprehensive characterization of somatic variants associated with intronic polyadenylation in human cancers
por: Zhao, Zhaozhao, et al.
Publicado: (2021)

Determination of the two-component systems regulatory network reveals core and accessory regulations across Pseudomonas aeruginosa lineages
por: Trouillon, Julian, et al.
Publicado: (2021)

JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
por: Sreedasyam, Avinash, et al.
Publicado: (2023)

A rice variation map derived from 10 548 rice accessions reveals the importance of rare variants
por: Wang, Tianyi, et al.
Publicado: (2023)

GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data
por: Giacopuzzi, Edoardo, et al.
Publicado: (2022)

A transcriptomic study for identifying cardia‐ and non–cardia‐specific gastric cancer prognostic factors using genetic algorithm‐based methods
por: Xin, Junyi, et al.
Publicado: (2020)

Performance evaluation of differential splicing analysis methods and splicing analytics platform construction
por: Li, Kuokuo, et al.
Publicado: (2022)

Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes
por: Khedkar, Supriya, et al.
Publicado: (2022)

An expanded landscape of human long noncoding RNA
por: Jiang, Shuai, et al.
Publicado: (2019)

Evaluation of GWAS-Identified Genetic Variants for Gastric Cancer Survival
por: Gu, Dongying, et al.
Publicado: (2018)

Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast
por: Decourty, Laurence, et al.
Publicado: (2021)

Virus-specific editing identification approach reveals the landscape of A-to-I editing and its impacts on SARS-CoV-2 characteristics and evolution
por: Song, Yulong, et al.
Publicado: (2022)

New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs
por: Zhang, Shoudong, et al.
Publicado: (2020)

A comprehensive, cell specific microRNA catalogue of human peripheral blood
por: Juzenas, Simonas, et al.
Publicado: (2017)

Macrophage development and activation involve coordinated intron retention in key inflammatory regulators
por: Green, Immanuel D, et al.
Publicado: (2020)

Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes: molecular insight into sex-specific processes and translational repression
por: Lasonder, Edwin, et al.
Publicado: (2016)

Molecular signatures associated with ZIKV exposure in human cortical neural progenitors
por: Zhang, Feiran, et al.
Publicado: (2016)

GenoLIB: a database of biological parts derived from a library of common plasmid features
por: Adames, Neil R., et al.
Publicado: (2015)

Significant expansion of the REST/NRSF cistrome in human versus mouse embryonic stem cells: potential implications for neural development
por: Rockowitz, Shira, et al.
Publicado: (2015)

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium
por: Yu, Nancy Yiu-Lin, et al.
Publicado: (2015)

Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation
por: Dillon, Laura A. L., et al.
Publicado: (2015)

RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates
por: Rajput, Bhanu, et al.
Publicado: (2015)

High-resolution analysis of the human retina miRNome reveals isomiR variations and novel microRNAs
por: Karali, Marianthi, et al.
Publicado: (2016)

An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum
por: Bock, Thomas, et al.
Publicado: (2014)

Multi-omics maps of cotton fibre reveal epigenetic basis for staged single-cell differentiation
por: Wang, Maojun, et al.
Publicado: (2016)

Systematic identification of gene family regulators in mouse and human embryonic stem cells
por: Aaronson, Yair, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_f1lmcb8gquhsaflhchon84rcl2