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BlastFrost: fast querying of 100,000s of bacterial genomes in Bifrost graphs

BlastFrost is a highly efficient method for querying 100,000s of genome assemblies, building on Bifrost, a dynamic data structure for compacted and colored de Bruijn graphs. BlastFrost queries a Bifrost data structure for sequences of interest and extracts local subgraphs, enabling the identificatio...

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Detalles Bibliográficos
Autores principales:	Luhmann, Nina, Holley, Guillaume, Achtman, Mark
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Method
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7798312/ https://www.ncbi.nlm.nih.gov/pubmed/33430919 http://dx.doi.org/10.1186/s13059-020-02237-3

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