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Network graph representation of COVID-19 scientific publications to aid knowledge discovery
INTRODUCTION: Numerous scientific journal articles related to COVID-19 have been rapidly published, making navigation and understanding of relationships difficult. METHODS: A graph network was constructed from the publicly available COVID-19 Open Research Dataset (CORD-19) of COVID-19-related public...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BMJ Publishing Group
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7798427/ https://www.ncbi.nlm.nih.gov/pubmed/33419870 http://dx.doi.org/10.1136/bmjhci-2020-100254 |
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author | Cernile, George Heritage, Trevor Sebire, Neil J Gordon, Ben Schwering, Taralyn Kazemlou, Shana Borecki, Yulia |
author_facet | Cernile, George Heritage, Trevor Sebire, Neil J Gordon, Ben Schwering, Taralyn Kazemlou, Shana Borecki, Yulia |
author_sort | Cernile, George |
collection | PubMed |
description | INTRODUCTION: Numerous scientific journal articles related to COVID-19 have been rapidly published, making navigation and understanding of relationships difficult. METHODS: A graph network was constructed from the publicly available COVID-19 Open Research Dataset (CORD-19) of COVID-19-related publications using an engine leveraging medical knowledge bases to identify discrete medical concepts and an open-source tool (Gephi) to visualise the network. RESULTS: The network shows connections between diseases, medications and procedures identified from the title and abstract of 195 958 COVID-19-related publications (CORD-19 Dataset). Connections between terms with few publications, those unconnected to the main network and those irrelevant were not displayed. Nodes were coloured by knowledge base and the size of the node related to the number of publications containing the term. The data set and visualisations were made publicly accessible via a webtool. CONCLUSION: Knowledge management approaches (text mining and graph networks) can effectively allow rapid navigation and exploration of entity inter-relationships to improve understanding of diseases such as COVID-19. |
format | Online Article Text |
id | pubmed-7798427 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BMJ Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-77984272021-01-11 Network graph representation of COVID-19 scientific publications to aid knowledge discovery Cernile, George Heritage, Trevor Sebire, Neil J Gordon, Ben Schwering, Taralyn Kazemlou, Shana Borecki, Yulia BMJ Health Care Inform Short Report INTRODUCTION: Numerous scientific journal articles related to COVID-19 have been rapidly published, making navigation and understanding of relationships difficult. METHODS: A graph network was constructed from the publicly available COVID-19 Open Research Dataset (CORD-19) of COVID-19-related publications using an engine leveraging medical knowledge bases to identify discrete medical concepts and an open-source tool (Gephi) to visualise the network. RESULTS: The network shows connections between diseases, medications and procedures identified from the title and abstract of 195 958 COVID-19-related publications (CORD-19 Dataset). Connections between terms with few publications, those unconnected to the main network and those irrelevant were not displayed. Nodes were coloured by knowledge base and the size of the node related to the number of publications containing the term. The data set and visualisations were made publicly accessible via a webtool. CONCLUSION: Knowledge management approaches (text mining and graph networks) can effectively allow rapid navigation and exploration of entity inter-relationships to improve understanding of diseases such as COVID-19. BMJ Publishing Group 2021-01-08 /pmc/articles/PMC7798427/ /pubmed/33419870 http://dx.doi.org/10.1136/bmjhci-2020-100254 Text en © Author(s) (or their employer(s)) 2021. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. http://creativecommons.org/licenses/by-nc/4.0/ http://creativecommons.org/licenses/by-nc/4.0/This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/. |
spellingShingle | Short Report Cernile, George Heritage, Trevor Sebire, Neil J Gordon, Ben Schwering, Taralyn Kazemlou, Shana Borecki, Yulia Network graph representation of COVID-19 scientific publications to aid knowledge discovery |
title | Network graph representation of COVID-19 scientific publications to aid knowledge discovery |
title_full | Network graph representation of COVID-19 scientific publications to aid knowledge discovery |
title_fullStr | Network graph representation of COVID-19 scientific publications to aid knowledge discovery |
title_full_unstemmed | Network graph representation of COVID-19 scientific publications to aid knowledge discovery |
title_short | Network graph representation of COVID-19 scientific publications to aid knowledge discovery |
title_sort | network graph representation of covid-19 scientific publications to aid knowledge discovery |
topic | Short Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7798427/ https://www.ncbi.nlm.nih.gov/pubmed/33419870 http://dx.doi.org/10.1136/bmjhci-2020-100254 |
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