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The complete chloroplast genome sequence of Populus wilsonii and its phylogenetic analysis
The complete chloroplast genome of Populus wilsonii was reconstructed by reference-based assembly using whole-genome sequencing data. The total chloroplast genome size of P. wilsonii was 158,080 bp in length, including a pair of inverted repeat regions (IRs) of 27,749 bp each, a large single-copy re...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799498/ https://www.ncbi.nlm.nih.gov/pubmed/33474042 http://dx.doi.org/10.1080/23802359.2017.1413291 |
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author | Han, Xue-Min Wang, Yi-Ming Liu, Yan-Jing |
author_facet | Han, Xue-Min Wang, Yi-Ming Liu, Yan-Jing |
author_sort | Han, Xue-Min |
collection | PubMed |
description | The complete chloroplast genome of Populus wilsonii was reconstructed by reference-based assembly using whole-genome sequencing data. The total chloroplast genome size of P. wilsonii was 158,080 bp in length, including a pair of inverted repeat regions (IRs) of 27,749 bp each, a large single-copy region (LSC) of 85,949 bp and a small single-copy region (SSC) of 16,633 bp. A total of 133 genes were predicted from the chloroplast genome, including 86 protein-coding genes, 39 tRNA genes and eight rRNA genes. Among these genes, 20 genes occurred in IRs, containing nine protein-coding genes, seven tRNA genes and four rRNA genes. The GC content of P. wilsonii chloroplast genome was 36.6%. The phylogenetic analysis with 15 other species showed that P. wilsonii was closely clustered with Populus cathayana. The complete chloroplast genome of P. wilsonii provides new insights into Populus evolutionary and genomic studies. |
format | Online Article Text |
id | pubmed-7799498 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77994982021-01-19 The complete chloroplast genome sequence of Populus wilsonii and its phylogenetic analysis Han, Xue-Min Wang, Yi-Ming Liu, Yan-Jing Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of Populus wilsonii was reconstructed by reference-based assembly using whole-genome sequencing data. The total chloroplast genome size of P. wilsonii was 158,080 bp in length, including a pair of inverted repeat regions (IRs) of 27,749 bp each, a large single-copy region (LSC) of 85,949 bp and a small single-copy region (SSC) of 16,633 bp. A total of 133 genes were predicted from the chloroplast genome, including 86 protein-coding genes, 39 tRNA genes and eight rRNA genes. Among these genes, 20 genes occurred in IRs, containing nine protein-coding genes, seven tRNA genes and four rRNA genes. The GC content of P. wilsonii chloroplast genome was 36.6%. The phylogenetic analysis with 15 other species showed that P. wilsonii was closely clustered with Populus cathayana. The complete chloroplast genome of P. wilsonii provides new insights into Populus evolutionary and genomic studies. Taylor & Francis 2017-12-08 /pmc/articles/PMC7799498/ /pubmed/33474042 http://dx.doi.org/10.1080/23802359.2017.1413291 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Han, Xue-Min Wang, Yi-Ming Liu, Yan-Jing The complete chloroplast genome sequence of Populus wilsonii and its phylogenetic analysis |
title | The complete chloroplast genome sequence of Populus wilsonii and its phylogenetic analysis |
title_full | The complete chloroplast genome sequence of Populus wilsonii and its phylogenetic analysis |
title_fullStr | The complete chloroplast genome sequence of Populus wilsonii and its phylogenetic analysis |
title_full_unstemmed | The complete chloroplast genome sequence of Populus wilsonii and its phylogenetic analysis |
title_short | The complete chloroplast genome sequence of Populus wilsonii and its phylogenetic analysis |
title_sort | complete chloroplast genome sequence of populus wilsonii and its phylogenetic analysis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799498/ https://www.ncbi.nlm.nih.gov/pubmed/33474042 http://dx.doi.org/10.1080/23802359.2017.1413291 |
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